Hb_014361_110

Information

Type -
Description -
Location Contig14361: 94064-98984
Sequence    

Annotation

kegg
ID rcu:RCOM_0396310
description RNA binding protein, putative
nr
ID XP_002533159.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q5L0Q3
description Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc PE=3 SV=1
trembl
ID B9T4J0
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0396310 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11462: 94070-98502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_110 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_000548_060 0.0826091371 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
3 Hb_000803_240 0.0917883783 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
4 Hb_000684_430 0.0973806073 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
5 Hb_018043_020 0.0999952862 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
6 Hb_001723_030 0.1015761371 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
7 Hb_005116_100 0.1016231977 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
8 Hb_002217_140 0.1058103499 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
9 Hb_002928_030 0.1060949801 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
10 Hb_000537_070 0.1078746046 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
11 Hb_004055_160 0.1091699069 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
12 Hb_003171_030 0.109976551 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
13 Hb_036790_120 0.1122030079 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
14 Hb_025194_090 0.1132248101 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
15 Hb_001250_020 0.1145068229 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
16 Hb_008616_040 0.1172268226 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
17 Hb_003029_140 0.118699335 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
18 Hb_166127_030 0.1199824484 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002005_040 0.1208884536 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_003029_020 0.1210956613 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_014361_110 Hb_014361_110 Hb_000548_060 Hb_000548_060 Hb_014361_110--Hb_000548_060 Hb_000803_240 Hb_000803_240 Hb_014361_110--Hb_000803_240 Hb_000684_430 Hb_000684_430 Hb_014361_110--Hb_000684_430 Hb_018043_020 Hb_018043_020 Hb_014361_110--Hb_018043_020 Hb_001723_030 Hb_001723_030 Hb_014361_110--Hb_001723_030 Hb_005116_100 Hb_005116_100 Hb_014361_110--Hb_005116_100 Hb_036790_120 Hb_036790_120 Hb_000548_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000548_060--Hb_007426_170 Hb_010128_020 Hb_010128_020 Hb_000548_060--Hb_010128_020 Hb_001959_060 Hb_001959_060 Hb_000548_060--Hb_001959_060 Hb_003029_020 Hb_003029_020 Hb_000548_060--Hb_003029_020 Hb_000803_240--Hb_001723_030 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_000684_430--Hb_001959_060 Hb_004055_160 Hb_004055_160 Hb_000684_430--Hb_004055_160 Hb_000684_430--Hb_002217_140 Hb_006829_080 Hb_006829_080 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_003029_140 Hb_003029_140 Hb_018043_020--Hb_003029_140 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_001723_030--Hb_002217_140 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_001723_030--Hb_000684_430 Hb_005116_100--Hb_002005_040 Hb_005116_100--Hb_148146_010 Hb_005618_080 Hb_005618_080 Hb_005116_100--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_005116_100--Hb_000402_020 Hb_005116_100--Hb_004055_160 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5469 7.2845 21.9723 7.72658 4.74687 4.73356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4571 5.48742 3.03275 7.21374 47.3641

CAGE analysis