Hb_002027_410

Information

Type -
Description -
Location Contig2027: 249217-257700
Sequence    

Annotation

kegg
ID rcu:RCOM_0556530
description serine endopeptidase degp2, putative (EC:1.3.1.74)
nr
ID XP_012082659.1
description PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
swissprot
ID O82261
description Protease Do-like 2, chloroplastic OS=Arabidopsis thaliana GN=DEGP2 PE=1 SV=2
trembl
ID A0A067K8D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13850 PE=4 SV=1
Gene Ontology
ID GO:0004252
description protease do-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20728: 249322-257614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_410 0.0 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
2 Hb_001723_030 0.089275915 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
3 Hb_016461_030 0.1067913912 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_006637_080 0.1078347692 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
5 Hb_003777_020 0.109329768 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
6 Hb_000803_240 0.1132915871 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
7 Hb_000144_060 0.1150303184 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002282_070 0.1162185712 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
9 Hb_000345_370 0.1169489402 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
10 Hb_002217_140 0.1178627294 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
11 Hb_000309_020 0.1186730979 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
12 Hb_000059_270 0.121380281 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
13 Hb_036790_120 0.1223406604 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
14 Hb_000976_190 0.1227550851 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
15 Hb_000661_090 0.1230248742 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
16 Hb_002685_060 0.1244579465 - - 30S ribosomal protein S5, putative [Ricinus communis]
17 Hb_002740_190 0.1282779986 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
18 Hb_011861_050 0.1299994633 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
19 Hb_189003_060 0.1328459722 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001427_040 0.134927054 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_410 Hb_002027_410 Hb_001723_030 Hb_001723_030 Hb_002027_410--Hb_001723_030 Hb_016461_030 Hb_016461_030 Hb_002027_410--Hb_016461_030 Hb_006637_080 Hb_006637_080 Hb_002027_410--Hb_006637_080 Hb_003777_020 Hb_003777_020 Hb_002027_410--Hb_003777_020 Hb_000803_240 Hb_000803_240 Hb_002027_410--Hb_000803_240 Hb_000144_060 Hb_000144_060 Hb_002027_410--Hb_000144_060 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_001723_030--Hb_016461_030 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_006637_080--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_006637_080--Hb_002685_060 Hb_006637_080--Hb_002282_070 Hb_036790_120 Hb_036790_120 Hb_006637_080--Hb_036790_120 Hb_006637_080--Hb_016461_030 Hb_003777_020--Hb_002282_070 Hb_003777_020--Hb_002685_060 Hb_000661_090 Hb_000661_090 Hb_003777_020--Hb_000661_090 Hb_003777_020--Hb_000345_370 Hb_003777_020--Hb_001427_040 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_000144_060--Hb_000345_370 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_000144_060--Hb_002542_160 Hb_000144_060--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.48699 2.16806 14.743 4.4293 2.98692 5.83612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87627 3.27163 3.32346 4.94994 29.6738

CAGE analysis