Hb_006637_080

Information

Type -
Description -
Location Contig6637: 65100-67475
Sequence    

Annotation

kegg
ID rcu:RCOM_1355620
description ribonucleoprotein, chloroplast, putative
nr
ID XP_012082369.1
description PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZUU4
description RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1
trembl
ID A0A067JYS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006637_080 0.0 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
2 Hb_003777_020 0.107604947 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
3 Hb_002027_410 0.1078347692 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
4 Hb_002685_060 0.1100381355 - - 30S ribosomal protein S5, putative [Ricinus communis]
5 Hb_002282_070 0.1277658787 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
6 Hb_036790_120 0.1284568942 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
7 Hb_016461_030 0.1362041392 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000661_090 0.136761277 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_000296_080 0.1368862624 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
10 Hb_000934_020 0.1403135119 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
11 Hb_000345_370 0.1405510886 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
12 Hb_007054_070 0.1421148663 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
13 Hb_001723_030 0.1454852662 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
14 Hb_003878_080 0.1479162883 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
15 Hb_158845_050 0.1503788995 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
16 Hb_000069_490 0.1527205219 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000402_170 0.1539816962 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
18 Hb_000112_060 0.1552434097 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
19 Hb_003427_080 0.1553433158 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
20 Hb_005588_110 0.1555180578 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]

Gene co-expression network

sample Hb_006637_080 Hb_006637_080 Hb_003777_020 Hb_003777_020 Hb_006637_080--Hb_003777_020 Hb_002027_410 Hb_002027_410 Hb_006637_080--Hb_002027_410 Hb_002685_060 Hb_002685_060 Hb_006637_080--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_006637_080--Hb_002282_070 Hb_036790_120 Hb_036790_120 Hb_006637_080--Hb_036790_120 Hb_016461_030 Hb_016461_030 Hb_006637_080--Hb_016461_030 Hb_003777_020--Hb_002282_070 Hb_003777_020--Hb_002685_060 Hb_003777_020--Hb_016461_030 Hb_000661_090 Hb_000661_090 Hb_003777_020--Hb_000661_090 Hb_000345_370 Hb_000345_370 Hb_003777_020--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_003777_020--Hb_001427_040 Hb_001723_030 Hb_001723_030 Hb_002027_410--Hb_001723_030 Hb_002027_410--Hb_016461_030 Hb_002027_410--Hb_003777_020 Hb_000803_240 Hb_000803_240 Hb_002027_410--Hb_000803_240 Hb_000144_060 Hb_000144_060 Hb_002027_410--Hb_000144_060 Hb_002685_060--Hb_002282_070 Hb_002685_060--Hb_016461_030 Hb_007054_070 Hb_007054_070 Hb_002685_060--Hb_007054_070 Hb_002685_060--Hb_000661_090 Hb_005276_010 Hb_005276_010 Hb_002685_060--Hb_005276_010 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_000345_370 Hb_002282_070--Hb_000144_060 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_016461_030--Hb_000345_370 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_016461_030--Hb_001427_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18462 1.01996 3.75101 1.19107 1.01739 2.92357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09276 1.97527 1.42009 1.14555 12.5565

CAGE analysis