Hb_036790_120

Information

Type -
Description -
Location Contig36790: 94501-99345
Sequence    

Annotation

kegg
ID rcu:RCOM_0296330
description hypothetical protein
nr
ID XP_012086022.1
description PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
swissprot
ID P46228
description 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
trembl
ID B9SM67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296330 PE=4 SV=1
Gene Ontology
ID GO:0003676
description s1 rna-binding domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37799: 94655-94822 , PASA_asmbl_37800: 94948-96582 , PASA_asmbl_37801: 94839-95117 , PASA_asmbl_37802: 96754-98564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036790_120 0.0 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
2 Hb_000402_170 0.0974587676 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
3 Hb_000548_060 0.0994995627 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
4 Hb_000977_270 0.1005211293 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
5 Hb_000189_250 0.1008921242 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
6 Hb_000684_280 0.101580862 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
7 Hb_010128_020 0.1034122927 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
8 Hb_000112_060 0.1037889263 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
9 Hb_001723_030 0.105491075 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
10 Hb_007044_250 0.1088813776 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001792_030 0.1097426216 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
12 Hb_000934_020 0.1100340299 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
13 Hb_000661_090 0.1100820548 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_014361_110 0.1122030079 - - RNA binding protein, putative [Ricinus communis]
15 Hb_007426_170 0.1145555682 transcription factor TF Family: TCP -
16 Hb_003777_020 0.1159754677 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
17 Hb_016461_030 0.1168270329 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000152_480 0.1198675494 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
19 Hb_003494_030 0.1205608422 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
20 Hb_000189_520 0.121577147 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]

Gene co-expression network

sample Hb_036790_120 Hb_036790_120 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020 Hb_003427_080 Hb_003427_080 Hb_000402_170--Hb_003427_080 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_014361_110 Hb_014361_110 Hb_000548_060--Hb_014361_110 Hb_007426_170 Hb_007426_170 Hb_000548_060--Hb_007426_170 Hb_000548_060--Hb_010128_020 Hb_001959_060 Hb_001959_060 Hb_000548_060--Hb_001959_060 Hb_003029_020 Hb_003029_020 Hb_000548_060--Hb_003029_020 Hb_007044_250 Hb_007044_250 Hb_000977_270--Hb_007044_250 Hb_003106_170 Hb_003106_170 Hb_000977_270--Hb_003106_170 Hb_001484_080 Hb_001484_080 Hb_000977_270--Hb_001484_080 Hb_000977_270--Hb_002304_180 Hb_003752_060 Hb_003752_060 Hb_000977_270--Hb_003752_060 Hb_000934_020 Hb_000934_020 Hb_000189_250--Hb_000934_020 Hb_166127_030 Hb_166127_030 Hb_000189_250--Hb_166127_030 Hb_000640_260 Hb_000640_260 Hb_000189_250--Hb_000640_260 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_003941_030 Hb_003941_030 Hb_000684_280--Hb_003941_030 Hb_000661_090 Hb_000661_090 Hb_000684_280--Hb_000661_090 Hb_000537_070 Hb_000537_070 Hb_000684_280--Hb_000537_070 Hb_011053_030 Hb_011053_030 Hb_000684_280--Hb_011053_030 Hb_000684_280--Hb_000189_250 Hb_010128_020--Hb_003029_020 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_000112_060 Hb_000112_060 Hb_010128_020--Hb_000112_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00113 2.06622 9.27786 3.91352 1.51548 2.78364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05574 4.06617 2.8164 2.63746 25.484

CAGE analysis