Hb_007044_250

Information

Type -
Description -
Location Contig7044: 214199-218895
Sequence    

Annotation

kegg
ID rcu:RCOM_0015770
description hypothetical protein
nr
ID XP_002530392.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55403
description Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0575 PE=4 SV=1
trembl
ID B9SWM3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0015770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55039: 214268-218792 , PASA_asmbl_55040: 214507-218813 , PASA_asmbl_55041: 219304-219652 , PASA_asmbl_55042: 219680-221744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000977_270 0.0459997376 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
3 Hb_003106_170 0.0872861311 - - Endonuclease III, putative [Ricinus communis]
4 Hb_001484_080 0.0919015937 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_003752_060 0.0952339669 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
6 Hb_002304_180 0.1042727035 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
7 Hb_036790_120 0.1088813776 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
8 Hb_114861_010 0.116394643 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
9 Hb_001792_030 0.1313049819 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
10 Hb_000189_520 0.1364460603 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
11 Hb_001133_100 0.1372571889 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
12 Hb_003494_030 0.1373225823 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
13 Hb_007694_060 0.1386868056 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
14 Hb_000012_010 0.1394038516 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
15 Hb_000110_230 0.1396225011 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_000667_140 0.1417233262 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
17 Hb_007426_170 0.144182952 transcription factor TF Family: TCP -
18 Hb_005563_040 0.1459746966 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
19 Hb_000402_170 0.1504541966 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
20 Hb_000548_060 0.1511619242 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]

Gene co-expression network

sample Hb_007044_250 Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_007044_250--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_007044_250--Hb_003106_170 Hb_001484_080 Hb_001484_080 Hb_007044_250--Hb_001484_080 Hb_003752_060 Hb_003752_060 Hb_007044_250--Hb_003752_060 Hb_002304_180 Hb_002304_180 Hb_007044_250--Hb_002304_180 Hb_036790_120 Hb_036790_120 Hb_007044_250--Hb_036790_120 Hb_000977_270--Hb_003106_170 Hb_000977_270--Hb_036790_120 Hb_000977_270--Hb_001484_080 Hb_000977_270--Hb_002304_180 Hb_000977_270--Hb_003752_060 Hb_003106_170--Hb_001484_080 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_003106_170--Hb_002304_180 Hb_000667_140 Hb_000667_140 Hb_003106_170--Hb_000667_140 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_001484_080--Hb_003752_060 Hb_003752_060--Hb_003106_170 Hb_003752_060--Hb_114861_010 Hb_003752_060--Hb_036790_120 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_002304_180--Hb_000667_140 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2079 7.72358 73.8361 22.9311 7.89948 9.06219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1374 30.652 24.3035 8.43635 200.296

CAGE analysis