Hb_000667_140

Information

Type -
Description -
Location Contig667: 280147-293084
Sequence    

Annotation

kegg
ID rcu:RCOM_1538500
description uridine cytidine kinase I, putative (EC:2.4.2.9 2.7.1.48)
nr
ID XP_012078488.1
description PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q8VYB2
description Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=2 SV=1
trembl
ID A0A0B2SI36
description Fructose-bisphosphate aldolase OS=Glycine soja GN=glysoja_025958 PE=3 SV=1
Gene Ontology
ID GO:0004332
description uridine kinase-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53284: 280230-281995 , PASA_asmbl_53287: 284167-293910
cDNA
(Sanger)
(ID:Location)		 030_C04.ab1: 280962-281995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000667_140 0.0 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
2 Hb_000038_020 0.0837753482 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
3 Hb_002304_180 0.0996025548 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
4 Hb_003427_080 0.1083918546 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
5 Hb_003494_030 0.1141401822 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
6 Hb_001266_160 0.1145198672 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
7 Hb_000359_070 0.116274453 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
8 Hb_000402_170 0.117195462 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
9 Hb_000069_370 0.1178389787 - - -
10 Hb_003106_170 0.1260181714 - - Endonuclease III, putative [Ricinus communis]
11 Hb_000977_270 0.1297000654 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
12 Hb_000029_330 0.1361789893 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
13 Hb_002835_090 0.1381462508 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
14 Hb_000012_010 0.1381965131 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
15 Hb_007044_250 0.1417233262 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005332_150 0.1449995258 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
17 Hb_000890_110 0.1466937364 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
18 Hb_036790_120 0.1469539898 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
19 Hb_000699_080 0.1473264957 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
20 Hb_004611_040 0.1486068634 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000667_140 Hb_000667_140 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_000667_140--Hb_000359_070 Hb_168031_020 Hb_168031_020 Hb_000038_020--Hb_168031_020 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_002304_180--Hb_003494_030 Hb_000977_270 Hb_000977_270 Hb_002304_180--Hb_000977_270 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_007044_250 Hb_007044_250 Hb_002304_180--Hb_007044_250 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_000032_390 Hb_000032_390 Hb_003494_030--Hb_000032_390 Hb_002232_380 Hb_002232_380 Hb_003494_030--Hb_002232_380 Hb_006829_080 Hb_006829_080 Hb_003494_030--Hb_006829_080 Hb_000193_220 Hb_000193_220 Hb_003494_030--Hb_000193_220 Hb_000029_330 Hb_000029_330 Hb_001266_160--Hb_000029_330 Hb_001266_160--Hb_000359_070 Hb_004979_050 Hb_004979_050 Hb_001266_160--Hb_004979_050 Hb_000317_180 Hb_000317_180 Hb_001266_160--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.15927 4.33181 36.2707 15.5194 4.87901 9.34231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.22999 6.64766 7.22062 7.75214 142.456

CAGE analysis