Hb_000069_370

Information

Type -
Description -
Location Contig69: 368618-393507
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54223: 369843-370462 , PASA_asmbl_54224: 370682-371076 , PASA_asmbl_54225: 371096-388106 , PASA_asmbl_54227: 374795-375182 , PASA_asmbl_54228: 388141-393444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_370 0.0 - - -
2 Hb_000038_020 0.1142826906 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
3 Hb_000029_330 0.1166617407 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
4 Hb_000667_140 0.1178389787 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
5 Hb_002835_090 0.1194021484 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
6 Hb_001266_160 0.1196752481 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
7 Hb_005332_150 0.1225947388 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
8 Hb_000966_040 0.127950952 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
9 Hb_000359_070 0.1296850272 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
10 Hb_003494_030 0.1345020377 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
11 Hb_000359_160 0.1356070055 - - PREDICTED: protein CAJ1 [Jatropha curcas]
12 Hb_002894_090 0.141444631 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
13 Hb_000193_220 0.1421764037 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
14 Hb_011900_020 0.1435994845 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
15 Hb_000032_390 0.1445160959 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
16 Hb_003427_080 0.1453907956 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
17 Hb_004109_130 0.1488821696 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
18 Hb_002304_180 0.1492330728 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
19 Hb_001377_060 0.1503760852 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
20 Hb_000317_180 0.1517143215 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000069_370 Hb_000069_370 Hb_000038_020 Hb_000038_020 Hb_000069_370--Hb_000038_020 Hb_000029_330 Hb_000029_330 Hb_000069_370--Hb_000029_330 Hb_000667_140 Hb_000667_140 Hb_000069_370--Hb_000667_140 Hb_002835_090 Hb_002835_090 Hb_000069_370--Hb_002835_090 Hb_001266_160 Hb_001266_160 Hb_000069_370--Hb_001266_160 Hb_005332_150 Hb_005332_150 Hb_000069_370--Hb_005332_150 Hb_000038_020--Hb_000667_140 Hb_168031_020 Hb_168031_020 Hb_000038_020--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_000038_020--Hb_000359_070 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000029_330--Hb_001266_160 Hb_000317_180 Hb_000317_180 Hb_000029_330--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_000029_330--Hb_134949_010 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_000667_140--Hb_003427_080 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_001266_160--Hb_000359_070 Hb_001266_160--Hb_004979_050 Hb_001266_160--Hb_000317_180 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_005332_150--Hb_168031_020 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96483 3.94256 10.6753 4.90882 1.14942 1.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09409 1.98426 1.51454 0.913662 38.1022

CAGE analysis