Hb_005332_150

Information

Type -
Description -
Location Contig5332: 100831-103128
Sequence    

Annotation

kegg
ID rcu:RCOM_0530990
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012071458.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
swissprot
ID Q9SNB7
description Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1
trembl
ID A0A067LGA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10203 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g46610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
2 Hb_000038_020 0.0990985708 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
3 Hb_004109_130 0.1087413492 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
4 Hb_000966_040 0.1096442664 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
5 Hb_168031_020 0.119729262 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
6 Hb_000069_370 0.1225947388 - - -
7 Hb_166127_030 0.1301327592 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000189_250 0.1349004666 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
9 Hb_000975_050 0.1413089488 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
10 Hb_000254_120 0.1430967001 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000667_140 0.1449995258 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
12 Hb_003077_130 0.1450477087 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
13 Hb_003427_080 0.145561139 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
14 Hb_011900_020 0.1482413949 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
15 Hb_002835_090 0.1503559949 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
16 Hb_021409_190 0.1527252337 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
17 Hb_000934_020 0.1527842628 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
18 Hb_000359_070 0.1556386337 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
19 Hb_002783_070 0.1582702339 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
20 Hb_004712_200 0.1583314923 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]

Gene co-expression network

sample Hb_005332_150 Hb_005332_150 Hb_000038_020 Hb_000038_020 Hb_005332_150--Hb_000038_020 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_168031_020 Hb_168031_020 Hb_005332_150--Hb_168031_020 Hb_000069_370 Hb_000069_370 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_000038_020--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_000038_020--Hb_000359_070 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000038_020--Hb_000069_370 Hb_004109_130--Hb_000966_040 Hb_020400_020 Hb_020400_020 Hb_004109_130--Hb_020400_020 Hb_065525_070 Hb_065525_070 Hb_004109_130--Hb_065525_070 Hb_000084_140 Hb_000084_140 Hb_004109_130--Hb_000084_140 Hb_000208_270 Hb_000208_270 Hb_004109_130--Hb_000208_270 Hb_000975_050 Hb_000975_050 Hb_000966_040--Hb_000975_050 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_000966_040--Hb_000193_220 Hb_010098_040 Hb_010098_040 Hb_000966_040--Hb_010098_040 Hb_000966_040--Hb_000208_270 Hb_001793_030 Hb_001793_030 Hb_168031_020--Hb_001793_030 Hb_000890_110 Hb_000890_110 Hb_168031_020--Hb_000890_110 Hb_168031_020--Hb_000359_070 Hb_078477_060 Hb_078477_060 Hb_168031_020--Hb_078477_060 Hb_000029_330 Hb_000029_330 Hb_000069_370--Hb_000029_330 Hb_000069_370--Hb_000667_140 Hb_002835_090 Hb_002835_090 Hb_000069_370--Hb_002835_090 Hb_001266_160 Hb_001266_160 Hb_000069_370--Hb_001266_160 Hb_000640_260 Hb_000640_260 Hb_166127_030--Hb_000640_260 Hb_000189_250 Hb_000189_250 Hb_166127_030--Hb_000189_250 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_000934_020 Hb_000934_020 Hb_166127_030--Hb_000934_020 Hb_021409_190 Hb_021409_190 Hb_166127_030--Hb_021409_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59838 3.94217 7.73129 3.26525 1.40038 1.29237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04583 0.716252 2.58088 2.53727 30.3885

CAGE analysis