Hb_001793_030

Information

Type -
Description -
Location Contig1793: 31060-35149
Sequence    

Annotation

kegg
ID tcc:TCM_020052
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
nr
ID XP_007033977.1
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EJR6
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao GN=TCM_020052 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17331: 15538-65681 , PASA_asmbl_17332: 15493-65585 , PASA_asmbl_17336: 23121-61556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001793_030 0.0 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
2 Hb_007933_030 0.1275699429 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
3 Hb_168031_020 0.1319363738 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
4 Hb_078477_060 0.133020474 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
5 Hb_001080_150 0.1338671076 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
6 Hb_000329_080 0.1353497446 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
7 Hb_000414_180 0.153026317 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
8 Hb_000574_330 0.1631170212 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_001195_370 0.1643154039 - - -
10 Hb_000300_680 0.1644272406 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
11 Hb_000963_090 0.1649808436 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
12 Hb_011609_210 0.1660215576 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
13 Hb_001811_080 0.1660664413 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
14 Hb_000084_140 0.1676036126 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
15 Hb_003226_190 0.1684767356 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
16 Hb_004712_200 0.1697821374 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
17 Hb_127552_050 0.1721628109 - - hypothetical protein VITISV_030752 [Vitis vinifera]
18 Hb_006483_120 0.1743094845 - - DNA binding protein, putative [Ricinus communis]
19 Hb_182651_020 0.1760519366 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_062013_010 0.1764105232 - - phosphoprotein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001793_030 Hb_001793_030 Hb_007933_030 Hb_007933_030 Hb_001793_030--Hb_007933_030 Hb_168031_020 Hb_168031_020 Hb_001793_030--Hb_168031_020 Hb_078477_060 Hb_078477_060 Hb_001793_030--Hb_078477_060 Hb_001080_150 Hb_001080_150 Hb_001793_030--Hb_001080_150 Hb_000329_080 Hb_000329_080 Hb_001793_030--Hb_000329_080 Hb_000414_180 Hb_000414_180 Hb_001793_030--Hb_000414_180 Hb_000521_090 Hb_000521_090 Hb_007933_030--Hb_000521_090 Hb_001195_370 Hb_001195_370 Hb_007933_030--Hb_001195_370 Hb_007933_030--Hb_001080_150 Hb_000300_680 Hb_000300_680 Hb_007933_030--Hb_000300_680 Hb_020400_020 Hb_020400_020 Hb_007933_030--Hb_020400_020 Hb_000038_020 Hb_000038_020 Hb_168031_020--Hb_000038_020 Hb_005332_150 Hb_005332_150 Hb_168031_020--Hb_005332_150 Hb_000890_110 Hb_000890_110 Hb_168031_020--Hb_000890_110 Hb_000359_070 Hb_000359_070 Hb_168031_020--Hb_000359_070 Hb_168031_020--Hb_078477_060 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_001080_030 Hb_001080_030 Hb_078477_060--Hb_001080_030 Hb_078477_060--Hb_001080_150 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_001080_150--Hb_000329_080 Hb_001080_150--Hb_000963_090 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000163_110 Hb_000163_110 Hb_000329_080--Hb_000163_110 Hb_000329_080--Hb_001195_370 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_000414_180--Hb_062013_010 Hb_005288_060 Hb_005288_060 Hb_000414_180--Hb_005288_060 Hb_000414_180--Hb_000329_080 Hb_000414_180--Hb_001080_150 Hb_000454_160 Hb_000454_160 Hb_000414_180--Hb_000454_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0504178 0.110596 0.0807324 0.204289 0.0318366 0.0211967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0366911 0.0433072 0.0274997 0.206422 0.889147

CAGE analysis