Hb_005288_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5288: 29217-35007
Sequence    

Annotation

kegg
ID cit:102621544
description disease resistance protein At4g27190-like
nr
ID XP_006471944.1
description PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID A0A061GTV5
description NB-ARC domain-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_040861 PE=4 SV=1
Gene Ontology
ID GO:0043531
description nb-arc domain-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47161: 28515-28769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_060 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
2 Hb_006594_080 0.1354538248 - - beta-glucosidase, putative [Ricinus communis]
3 Hb_000313_230 0.1429598719 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
4 Hb_000414_180 0.1496228522 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
5 Hb_000574_250 0.1557412944 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
6 Hb_010068_050 0.1567891964 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
7 Hb_002874_030 0.1701931855 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
8 Hb_062013_010 0.1784294266 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_000318_400 0.1821580924 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033594_100 0.1858138217 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001109_170 0.188692893 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
12 Hb_002759_040 0.1944635761 - - BnaA09g29830D [Brassica napus]
13 Hb_001811_080 0.1946165106 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
14 Hb_025668_020 0.1958135356 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002518_180 0.1965222343 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
16 Hb_181463_020 0.196792203 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
17 Hb_182424_020 0.1971199572 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
18 Hb_001916_030 0.1981742114 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
19 Hb_000567_150 0.199183691 - - cysteine protease, putative [Ricinus communis]
20 Hb_178968_080 0.199993034 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_060 Hb_005288_060 Hb_006594_080 Hb_006594_080 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030 Hb_005332_050 Hb_005332_050 Hb_006594_080--Hb_005332_050 Hb_003992_220 Hb_003992_220 Hb_006594_080--Hb_003992_220 Hb_167211_010 Hb_167211_010 Hb_006594_080--Hb_167211_010 Hb_000442_170 Hb_000442_170 Hb_006594_080--Hb_000442_170 Hb_006594_080--Hb_000313_230 Hb_000313_230--Hb_005332_050 Hb_001054_060 Hb_001054_060 Hb_000313_230--Hb_001054_060 Hb_000997_320 Hb_000997_320 Hb_000313_230--Hb_000997_320 Hb_001310_050 Hb_001310_050 Hb_000313_230--Hb_001310_050 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000329_080 Hb_000329_080 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150 Hb_000454_160 Hb_000454_160 Hb_000414_180--Hb_000454_160 Hb_033594_100 Hb_033594_100 Hb_000574_250--Hb_033594_100 Hb_000453_240 Hb_000453_240 Hb_000574_250--Hb_000453_240 Hb_060658_010 Hb_060658_010 Hb_000574_250--Hb_060658_010 Hb_001040_150 Hb_001040_150 Hb_000574_250--Hb_001040_150 Hb_006700_040 Hb_006700_040 Hb_000574_250--Hb_006700_040 Hb_010068_050--Hb_000414_180 Hb_007130_010 Hb_007130_010 Hb_010068_050--Hb_007130_010 Hb_172939_010 Hb_172939_010 Hb_010068_050--Hb_172939_010 Hb_010068_050--Hb_006594_080 Hb_000875_070 Hb_000875_070 Hb_010068_050--Hb_000875_070 Hb_001005_040 Hb_001005_040 Hb_002874_030--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_002874_030--Hb_001109_170 Hb_001288_050 Hb_001288_050 Hb_002874_030--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_002874_030--Hb_000567_150 Hb_002016_130 Hb_002016_130 Hb_002874_030--Hb_002016_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00861456 0.031038 0.0937843 0.194729 0 0.013689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0174521 0.0137347 0.0264395 0.375058 0.472111

CAGE analysis