Hb_007130_010

Information

Type -
Description -
Location Contig7130: 4198-4461
Sequence    

Annotation

kegg
ID tcc:TCM_026214
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007130_010 0.0 - - -
2 Hb_000137_060 0.1538438866 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
3 Hb_000567_150 0.1667928259 - - cysteine protease, putative [Ricinus communis]
4 Hb_004310_170 0.1714028149 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
5 Hb_000751_070 0.1747462682 - - -
6 Hb_000465_180 0.1754177849 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
7 Hb_001288_050 0.1787429439 - - -
8 Hb_000445_030 0.1788166024 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
9 Hb_010068_050 0.1799762034 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
10 Hb_004218_310 0.1859826649 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
11 Hb_003095_110 0.1863814434 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_025668_020 0.1866618982 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000457_130 0.1904581115 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
14 Hb_000699_050 0.19582256 - - -
15 Hb_135554_010 0.1963352578 - - Insulin-degrading enzyme, putative [Ricinus communis]
16 Hb_003640_010 0.1980398714 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
17 Hb_046998_010 0.1991295216 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
18 Hb_021854_020 0.199442052 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
19 Hb_006594_080 0.1995001677 - - beta-glucosidase, putative [Ricinus communis]
20 Hb_000318_400 0.200506361 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007130_010 Hb_007130_010 Hb_000137_060 Hb_000137_060 Hb_007130_010--Hb_000137_060 Hb_000567_150 Hb_000567_150 Hb_007130_010--Hb_000567_150 Hb_004310_170 Hb_004310_170 Hb_007130_010--Hb_004310_170 Hb_000751_070 Hb_000751_070 Hb_007130_010--Hb_000751_070 Hb_000465_180 Hb_000465_180 Hb_007130_010--Hb_000465_180 Hb_001288_050 Hb_001288_050 Hb_007130_010--Hb_001288_050 Hb_000137_060--Hb_000465_180 Hb_000137_060--Hb_001288_050 Hb_000137_060--Hb_000567_150 Hb_001571_020 Hb_001571_020 Hb_000137_060--Hb_001571_020 Hb_001005_040 Hb_001005_040 Hb_000137_060--Hb_001005_040 Hb_000567_150--Hb_001288_050 Hb_000567_150--Hb_000751_070 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_000567_150--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010 Hb_000836_480 Hb_000836_480 Hb_004310_170--Hb_000836_480 Hb_001597_110 Hb_001597_110 Hb_004310_170--Hb_001597_110 Hb_006573_250 Hb_006573_250 Hb_004310_170--Hb_006573_250 Hb_099157_010 Hb_099157_010 Hb_004310_170--Hb_099157_010 Hb_006916_020 Hb_006916_020 Hb_004310_170--Hb_006916_020 Hb_000653_010 Hb_000653_010 Hb_004310_170--Hb_000653_010 Hb_146930_010 Hb_146930_010 Hb_000751_070--Hb_146930_010 Hb_000751_070--Hb_060152_010 Hb_000645_250 Hb_000645_250 Hb_000751_070--Hb_000645_250 Hb_000751_060 Hb_000751_060 Hb_000751_070--Hb_000751_060 Hb_000751_070--Hb_001288_050 Hb_000457_130 Hb_000457_130 Hb_000465_180--Hb_000457_130 Hb_007382_070 Hb_007382_070 Hb_000465_180--Hb_007382_070 Hb_135554_010 Hb_135554_010 Hb_000465_180--Hb_135554_010 Hb_001519_240 Hb_001519_240 Hb_000465_180--Hb_001519_240 Hb_000465_180--Hb_001288_050 Hb_001288_050--Hb_001005_040 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001288_050--Hb_001571_020 Hb_002016_130 Hb_002016_130 Hb_001288_050--Hb_002016_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.34725 9.30627 9.20971 2.03179 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.25825 1.66033 38.2595 30.3763

CAGE analysis