Hb_000836_480

Information

Type transcription factor
Description TF Family: WRKY
Location Contig836: 405174-406135
Sequence    

Annotation

kegg
ID rcu:RCOM_1616720
description WRKY transcription factor, putative
nr
ID XP_002511926.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q8GY11
description Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1
trembl
ID B9RDY7
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1616720 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 43

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_480 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_004310_170 0.1320767759 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
3 Hb_000653_010 0.1352859985 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
4 Hb_008066_060 0.1393565743 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_003398_090 0.1447435962 - - PREDICTED: expansin-A4 [Jatropha curcas]
6 Hb_015978_010 0.1535577394 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
7 Hb_001545_270 0.1634255857 - - laccase, putative [Ricinus communis]
8 Hb_130563_010 0.1644596075 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
9 Hb_000911_050 0.1658056166 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
10 Hb_003913_060 0.1667961246 - - ATP binding protein, putative [Ricinus communis]
11 Hb_006573_250 0.1714552847 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
12 Hb_004223_180 0.1719187891 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
13 Hb_000163_010 0.1721112192 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
14 Hb_003097_200 0.1727366795 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008226_020 0.173460268 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
16 Hb_011671_420 0.1742763833 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
17 Hb_003177_080 0.1743927961 - - hypothetical protein L484_016032 [Morus notabilis]
18 Hb_156499_010 0.1745180905 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
19 Hb_078081_020 0.1750321833 - - -
20 Hb_000139_500 0.175107438 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]

Gene co-expression network

sample Hb_000836_480 Hb_000836_480 Hb_004310_170 Hb_004310_170 Hb_000836_480--Hb_004310_170 Hb_000653_010 Hb_000653_010 Hb_000836_480--Hb_000653_010 Hb_008066_060 Hb_008066_060 Hb_000836_480--Hb_008066_060 Hb_003398_090 Hb_003398_090 Hb_000836_480--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_000836_480--Hb_015978_010 Hb_001545_270 Hb_001545_270 Hb_000836_480--Hb_001545_270 Hb_001597_110 Hb_001597_110 Hb_004310_170--Hb_001597_110 Hb_006573_250 Hb_006573_250 Hb_004310_170--Hb_006573_250 Hb_099157_010 Hb_099157_010 Hb_004310_170--Hb_099157_010 Hb_006916_020 Hb_006916_020 Hb_004310_170--Hb_006916_020 Hb_004310_170--Hb_000653_010 Hb_000653_010--Hb_008066_060 Hb_130563_010 Hb_130563_010 Hb_000653_010--Hb_130563_010 Hb_012753_190 Hb_012753_190 Hb_000653_010--Hb_012753_190 Hb_008226_020 Hb_008226_020 Hb_000653_010--Hb_008226_020 Hb_000138_020 Hb_000138_020 Hb_000653_010--Hb_000138_020 Hb_000139_500 Hb_000139_500 Hb_008066_060--Hb_000139_500 Hb_000723_240 Hb_000723_240 Hb_008066_060--Hb_000723_240 Hb_008066_060--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_008066_060--Hb_008418_010 Hb_001430_090 Hb_001430_090 Hb_003398_090--Hb_001430_090 Hb_003913_060 Hb_003913_060 Hb_003398_090--Hb_003913_060 Hb_003398_090--Hb_015978_010 Hb_003398_090--Hb_000139_500 Hb_000393_030 Hb_000393_030 Hb_003398_090--Hb_000393_030 Hb_000163_010 Hb_000163_010 Hb_003398_090--Hb_000163_010 Hb_015978_010--Hb_003913_060 Hb_015978_010--Hb_000163_010 Hb_000751_060 Hb_000751_060 Hb_015978_010--Hb_000751_060 Hb_011849_020 Hb_011849_020 Hb_015978_010--Hb_011849_020 Hb_010334_050 Hb_010334_050 Hb_015978_010--Hb_010334_050 Hb_001922_010 Hb_001922_010 Hb_001545_270--Hb_001922_010 Hb_109673_010 Hb_109673_010 Hb_001545_270--Hb_109673_010 Hb_001218_070 Hb_001218_070 Hb_001545_270--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_001545_270--Hb_000911_050 Hb_001545_270--Hb_000723_240 Hb_001545_270--Hb_008418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.156905 0.438788 1.67237 0.066772 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0602523 0.107977 4.38093 1.31699

CAGE analysis