Hb_012753_190

Information

Type -
Description -
Location Contig12753: 93555-103620
Sequence    

Annotation

kegg
ID cit:102614729
description protein HAPLESS 2-like
nr
ID XP_011029203.1
description PREDICTED: protein HAPLESS 2 [Populus euphratica]
swissprot
ID F4JP36
description Protein HAPLESS 2 OS=Arabidopsis thaliana GN=HAP2 PE=2 SV=1
trembl
ID A0A067FK00
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005351mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_190 0.0 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
2 Hb_000653_010 0.1347390358 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
3 Hb_001004_100 0.1404322627 - - ATP binding protein, putative [Ricinus communis]
4 Hb_006141_030 0.1511097063 - - -
5 Hb_007101_210 0.1512602717 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000230_230 0.1547793229 - - hydrolase, putative [Ricinus communis]
7 Hb_001268_330 0.1567868394 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_004800_220 0.1628792146 - - PREDICTED: random slug protein 5 [Jatropha curcas]
9 Hb_001123_010 0.1779647069 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004310_170 0.1805758095 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
11 Hb_011200_020 0.1814635015 - - aldo-keto reductase, putative [Ricinus communis]
12 Hb_000753_250 0.184102992 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
13 Hb_000204_030 0.1872598965 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_001104_200 0.1903610744 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
15 Hb_008097_020 0.1911968559 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_008066_060 0.1914118635 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
17 Hb_000005_230 0.1925969325 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
18 Hb_002835_350 0.1928255121 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
19 Hb_008768_010 0.1939212556 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
20 Hb_031042_030 0.1949293103 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012753_190 Hb_012753_190 Hb_000653_010 Hb_000653_010 Hb_012753_190--Hb_000653_010 Hb_001004_100 Hb_001004_100 Hb_012753_190--Hb_001004_100 Hb_006141_030 Hb_006141_030 Hb_012753_190--Hb_006141_030 Hb_007101_210 Hb_007101_210 Hb_012753_190--Hb_007101_210 Hb_000230_230 Hb_000230_230 Hb_012753_190--Hb_000230_230 Hb_001268_330 Hb_001268_330 Hb_012753_190--Hb_001268_330 Hb_008066_060 Hb_008066_060 Hb_000653_010--Hb_008066_060 Hb_130563_010 Hb_130563_010 Hb_000653_010--Hb_130563_010 Hb_000836_480 Hb_000836_480 Hb_000653_010--Hb_000836_480 Hb_008226_020 Hb_008226_020 Hb_000653_010--Hb_008226_020 Hb_000138_020 Hb_000138_020 Hb_000653_010--Hb_000138_020 Hb_001123_010 Hb_001123_010 Hb_001004_100--Hb_001123_010 Hb_158092_060 Hb_158092_060 Hb_001004_100--Hb_158092_060 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_001004_100--Hb_000653_010 Hb_012545_090 Hb_012545_090 Hb_006141_030--Hb_012545_090 Hb_002835_350 Hb_002835_350 Hb_006141_030--Hb_002835_350 Hb_006141_030--Hb_001123_010 Hb_002539_010 Hb_002539_010 Hb_006141_030--Hb_002539_010 Hb_000116_120 Hb_000116_120 Hb_006141_030--Hb_000116_120 Hb_032631_080 Hb_032631_080 Hb_007101_210--Hb_032631_080 Hb_000075_030 Hb_000075_030 Hb_007101_210--Hb_000075_030 Hb_001005_210 Hb_001005_210 Hb_007101_210--Hb_001005_210 Hb_001922_010 Hb_001922_010 Hb_007101_210--Hb_001922_010 Hb_001691_060 Hb_001691_060 Hb_007101_210--Hb_001691_060 Hb_001104_200 Hb_001104_200 Hb_000230_230--Hb_001104_200 Hb_025526_010 Hb_025526_010 Hb_000230_230--Hb_025526_010 Hb_006788_150 Hb_006788_150 Hb_000230_230--Hb_006788_150 Hb_031042_030 Hb_031042_030 Hb_000230_230--Hb_031042_030 Hb_008768_010 Hb_008768_010 Hb_000230_230--Hb_008768_010 Hb_000580_070 Hb_000580_070 Hb_000230_230--Hb_000580_070 Hb_131864_020 Hb_131864_020 Hb_001268_330--Hb_131864_020 Hb_000204_030 Hb_000204_030 Hb_001268_330--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_001268_330--Hb_029510_110 Hb_001268_330--Hb_001104_200 Hb_007044_070 Hb_007044_070 Hb_001268_330--Hb_007044_070 Hb_000753_250 Hb_000753_250 Hb_001268_330--Hb_000753_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0287455 0.191364 0.357943 0.37887 0.0459742 0.0135278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0175616 0.0829144 0.131737 2.27726 0.38191

CAGE analysis