Hb_000230_230

Information

Type -
Description -
Location Contig230: 244681-246809
Sequence    

Annotation

kegg
ID rcu:RCOM_0679030
description hydrolase, putative
nr
ID XP_002516829.1
description hydrolase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSW0
description Hydrolase, putative OS=Ricinus communis GN=RCOM_0679030 PE=4 SV=1
Gene Ontology
ID GO:0004519
description dnase i-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_230 0.0 - - hydrolase, putative [Ricinus communis]
2 Hb_001104_200 0.124231091 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
3 Hb_025526_010 0.1273512992 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
4 Hb_006788_150 0.1318478942 - - conserved hypothetical protein [Ricinus communis]
5 Hb_031042_030 0.1351798193 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
6 Hb_008768_010 0.1406422347 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
7 Hb_000580_070 0.1424632103 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_056101_010 0.145685246 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
9 Hb_001104_210 0.1501452465 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
10 Hb_000204_030 0.1520275103 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_003090_180 0.1543903876 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
12 Hb_001136_030 0.1546093804 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
13 Hb_012753_190 0.1547793229 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
14 Hb_004881_060 0.1574941478 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
15 Hb_011063_060 0.158167577 - - PREDICTED: endochitinase-like [Jatropha curcas]
16 Hb_000077_330 0.1586362135 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
17 Hb_012553_020 0.1593565745 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
18 Hb_000422_020 0.1630500438 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_010334_040 0.1634756185 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
20 Hb_000412_060 0.1634870689 - - hypothetical protein JCGZ_18814 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_230 Hb_000230_230 Hb_001104_200 Hb_001104_200 Hb_000230_230--Hb_001104_200 Hb_025526_010 Hb_025526_010 Hb_000230_230--Hb_025526_010 Hb_006788_150 Hb_006788_150 Hb_000230_230--Hb_006788_150 Hb_031042_030 Hb_031042_030 Hb_000230_230--Hb_031042_030 Hb_008768_010 Hb_008768_010 Hb_000230_230--Hb_008768_010 Hb_000580_070 Hb_000580_070 Hb_000230_230--Hb_000580_070 Hb_000204_030 Hb_000204_030 Hb_001104_200--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_001104_200--Hb_029510_110 Hb_000934_170 Hb_000934_170 Hb_001104_200--Hb_000934_170 Hb_000563_610 Hb_000563_610 Hb_001104_200--Hb_000563_610 Hb_001104_200--Hb_000580_070 Hb_025526_010--Hb_006788_150 Hb_056101_010 Hb_056101_010 Hb_025526_010--Hb_056101_010 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_000422_020 Hb_000422_020 Hb_025526_010--Hb_000422_020 Hb_004881_060 Hb_004881_060 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_005116_010 Hb_005116_010 Hb_006788_150--Hb_005116_010 Hb_006788_150--Hb_000661_230 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_005010_040 Hb_005010_040 Hb_006788_150--Hb_005010_040 Hb_001024_030 Hb_001024_030 Hb_031042_030--Hb_001024_030 Hb_002686_390 Hb_002686_390 Hb_031042_030--Hb_002686_390 Hb_011063_060 Hb_011063_060 Hb_031042_030--Hb_011063_060 Hb_011200_020 Hb_011200_020 Hb_031042_030--Hb_011200_020 Hb_000254_040 Hb_000254_040 Hb_031042_030--Hb_000254_040 Hb_008768_010--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_008768_010--Hb_000683_010 Hb_008768_010--Hb_004881_060 Hb_008768_010--Hb_025526_010 Hb_000205_210 Hb_000205_210 Hb_008768_010--Hb_000205_210 Hb_011671_420 Hb_011671_420 Hb_008768_010--Hb_011671_420 Hb_000032_560 Hb_000032_560 Hb_000580_070--Hb_000032_560 Hb_018133_110 Hb_018133_110 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010957 1.42964 1.08297 1.52127 0.169145 0.274996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149507 0.137238 0.0741686 11.0702 1.52881

CAGE analysis