Hb_001024_030

Information

Type -
Description -
Location Contig1024: 83998-87134
Sequence    

Annotation

kegg
ID rcu:RCOM_0881500
description copine, putative
nr
ID XP_012074833.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SS90
description E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1
trembl
ID A0A067KHD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08985 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rglg2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01064: 84380-85214 , PASA_asmbl_01065: 85228-85882 , PASA_asmbl_01066: 85914-86657 , PASA_asmbl_01067: 86672-87286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001024_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
2 Hb_031042_030 0.1225716081 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
3 Hb_000254_040 0.1300331345 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
4 Hb_002686_390 0.1322419268 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
5 Hb_011200_020 0.1444522433 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_002200_060 0.1467359917 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
7 Hb_011063_060 0.1490767692 - - PREDICTED: endochitinase-like [Jatropha curcas]
8 Hb_001405_150 0.155444834 - - PREDICTED: protein At-4/1 [Jatropha curcas]
9 Hb_004079_110 0.1569068645 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
10 Hb_001660_040 0.1631787462 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
11 Hb_000684_490 0.1644162555 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
12 Hb_004657_040 0.1650325545 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
13 Hb_000471_010 0.1674292161 - - ATP binding protein, putative [Ricinus communis]
14 Hb_002272_230 0.169303834 - - sodium/hydrogen exchanger, putative [Ricinus communis]
15 Hb_005010_040 0.169468873 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
16 Hb_000227_370 0.1712999976 - - sugar transporter, putative [Ricinus communis]
17 Hb_001723_070 0.1713772196 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
18 Hb_000556_180 0.1718523398 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
19 Hb_010174_170 0.1726114336 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
20 Hb_009778_050 0.1733418432 - - hypothetical protein JCGZ_08917 [Jatropha curcas]

Gene co-expression network

sample Hb_001024_030 Hb_001024_030 Hb_031042_030 Hb_031042_030 Hb_001024_030--Hb_031042_030 Hb_000254_040 Hb_000254_040 Hb_001024_030--Hb_000254_040 Hb_002686_390 Hb_002686_390 Hb_001024_030--Hb_002686_390 Hb_011200_020 Hb_011200_020 Hb_001024_030--Hb_011200_020 Hb_002200_060 Hb_002200_060 Hb_001024_030--Hb_002200_060 Hb_011063_060 Hb_011063_060 Hb_001024_030--Hb_011063_060 Hb_031042_030--Hb_002686_390 Hb_031042_030--Hb_011063_060 Hb_000230_230 Hb_000230_230 Hb_031042_030--Hb_000230_230 Hb_031042_030--Hb_011200_020 Hb_031042_030--Hb_000254_040 Hb_000254_040--Hb_002686_390 Hb_006949_030 Hb_006949_030 Hb_000254_040--Hb_006949_030 Hb_001331_040 Hb_001331_040 Hb_000254_040--Hb_001331_040 Hb_000010_200 Hb_000010_200 Hb_000254_040--Hb_000010_200 Hb_001013_040 Hb_001013_040 Hb_000254_040--Hb_001013_040 Hb_000381_030 Hb_000381_030 Hb_000254_040--Hb_000381_030 Hb_002686_390--Hb_000010_200 Hb_006711_020 Hb_006711_020 Hb_002686_390--Hb_006711_020 Hb_002686_390--Hb_006949_030 Hb_004884_200 Hb_004884_200 Hb_002686_390--Hb_004884_200 Hb_001514_210 Hb_001514_210 Hb_002686_390--Hb_001514_210 Hb_000098_310 Hb_000098_310 Hb_011200_020--Hb_000098_310 Hb_001504_220 Hb_001504_220 Hb_011200_020--Hb_001504_220 Hb_032225_040 Hb_032225_040 Hb_011200_020--Hb_032225_040 Hb_032631_050 Hb_032631_050 Hb_011200_020--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_011200_020--Hb_000421_270 Hb_000521_360 Hb_000521_360 Hb_002200_060--Hb_000521_360 Hb_000473_070 Hb_000473_070 Hb_002200_060--Hb_000473_070 Hb_002272_230 Hb_002272_230 Hb_002200_060--Hb_002272_230 Hb_000265_080 Hb_000265_080 Hb_002200_060--Hb_000265_080 Hb_006788_150 Hb_006788_150 Hb_002200_060--Hb_006788_150 Hb_004800_220 Hb_004800_220 Hb_002200_060--Hb_004800_220 Hb_001660_040 Hb_001660_040 Hb_011063_060--Hb_001660_040 Hb_008225_080 Hb_008225_080 Hb_011063_060--Hb_008225_080 Hb_010334_040 Hb_010334_040 Hb_011063_060--Hb_010334_040 Hb_000288_140 Hb_000288_140 Hb_011063_060--Hb_000288_140 Hb_000025_740 Hb_000025_740 Hb_011063_060--Hb_000025_740 Hb_005010_040 Hb_005010_040 Hb_011063_060--Hb_005010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141786 3.0163 3.28642 1.60371 0.0102398 0.125479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.298466 0.352251 0 11.1666 1.15488

CAGE analysis