Hb_004800_220

Information

Type -
Description -
Location Contig4800: 172087-175830
Sequence    

Annotation

kegg
ID rcu:RCOM_0536840
description transporter, putative
nr
ID XP_012071644.1
description PREDICTED: random slug protein 5 [Jatropha curcas]
swissprot
ID Q9UU99
description CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC23B6.04c PE=1 SV=1
trembl
ID A0A067KR40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05319 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44707: 172457-174001 , PASA_asmbl_44708: 172204-174023 , PASA_asmbl_44709: 174317-175679 , PASA_asmbl_44710: 174317-175026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_220 0.0 - - PREDICTED: random slug protein 5 [Jatropha curcas]
2 Hb_002200_060 0.1445577717 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
3 Hb_000265_080 0.1517371024 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
4 Hb_008145_010 0.1553607155 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_008097_020 0.1589470427 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_025526_080 0.1598588127 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
7 Hb_012753_190 0.1628792146 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
8 Hb_006538_010 0.1638359176 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_000453_130 0.1655872541 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
10 Hb_001014_150 0.1673576024 - - zinc finger protein, putative [Ricinus communis]
11 Hb_002272_230 0.1743122478 - - sodium/hydrogen exchanger, putative [Ricinus communis]
12 Hb_031042_030 0.1759461793 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
13 Hb_006788_150 0.1892821504 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004631_080 0.1924475816 - - P3B-ATPase PH1 [Petunia x hybrida]
15 Hb_011200_020 0.1928723478 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_000230_230 0.1993359074 - - hydrolase, putative [Ricinus communis]
17 Hb_000473_070 0.1997147675 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
18 Hb_012553_020 0.2027786535 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
19 Hb_000101_360 0.2072767363 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
20 Hb_005010_040 0.2093238564 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]

Gene co-expression network

sample Hb_004800_220 Hb_004800_220 Hb_002200_060 Hb_002200_060 Hb_004800_220--Hb_002200_060 Hb_000265_080 Hb_000265_080 Hb_004800_220--Hb_000265_080 Hb_008145_010 Hb_008145_010 Hb_004800_220--Hb_008145_010 Hb_008097_020 Hb_008097_020 Hb_004800_220--Hb_008097_020 Hb_025526_080 Hb_025526_080 Hb_004800_220--Hb_025526_080 Hb_012753_190 Hb_012753_190 Hb_004800_220--Hb_012753_190 Hb_000521_360 Hb_000521_360 Hb_002200_060--Hb_000521_360 Hb_000473_070 Hb_000473_070 Hb_002200_060--Hb_000473_070 Hb_002272_230 Hb_002272_230 Hb_002200_060--Hb_002272_230 Hb_002200_060--Hb_000265_080 Hb_006788_150 Hb_006788_150 Hb_002200_060--Hb_006788_150 Hb_009296_060 Hb_009296_060 Hb_000265_080--Hb_009296_060 Hb_002960_010 Hb_002960_010 Hb_000265_080--Hb_002960_010 Hb_006538_010 Hb_006538_010 Hb_000265_080--Hb_006538_010 Hb_000453_130 Hb_000453_130 Hb_000265_080--Hb_000453_130 Hb_149515_010 Hb_149515_010 Hb_008145_010--Hb_149515_010 Hb_008145_010--Hb_000453_130 Hb_000649_180 Hb_000649_180 Hb_008145_010--Hb_000649_180 Hb_007919_040 Hb_007919_040 Hb_008145_010--Hb_007919_040 Hb_000527_070 Hb_000527_070 Hb_008145_010--Hb_000527_070 Hb_008097_020--Hb_006538_010 Hb_011063_060 Hb_011063_060 Hb_008097_020--Hb_011063_060 Hb_005010_040 Hb_005010_040 Hb_008097_020--Hb_005010_040 Hb_000684_490 Hb_000684_490 Hb_008097_020--Hb_000684_490 Hb_001454_300 Hb_001454_300 Hb_008097_020--Hb_001454_300 Hb_025526_080--Hb_002272_230 Hb_031042_030 Hb_031042_030 Hb_025526_080--Hb_031042_030 Hb_004631_080 Hb_004631_080 Hb_025526_080--Hb_004631_080 Hb_025526_080--Hb_000473_070 Hb_004656_010 Hb_004656_010 Hb_025526_080--Hb_004656_010 Hb_000653_010 Hb_000653_010 Hb_012753_190--Hb_000653_010 Hb_001004_100 Hb_001004_100 Hb_012753_190--Hb_001004_100 Hb_006141_030 Hb_006141_030 Hb_012753_190--Hb_006141_030 Hb_007101_210 Hb_007101_210 Hb_012753_190--Hb_007101_210 Hb_000230_230 Hb_000230_230 Hb_012753_190--Hb_000230_230 Hb_001268_330 Hb_001268_330 Hb_012753_190--Hb_001268_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0438614 4.86023 5.2313 1.91837 0.712066 0.404524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133306 0.576795 1.96593 20.6748 4.43198

CAGE analysis