Hb_000265_080

Information

Type -
Description -
Location Contig265: 101437-106536
Sequence    

Annotation

kegg
ID rcu:RCOM_1211410
description Vacuolar cation/proton exchanger, putative
nr
ID XP_002524559.1
description Vacuolar cation/proton exchanger, putative [Ricinus communis]
swissprot
ID Q8L783
description Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1
trembl
ID B9SEZ0
description Vacuolar cation/proton exchanger, putative OS=Ricinus communis GN=RCOM_1211410 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27686: 101454-102260 , PASA_asmbl_27687: 103831-103999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_080 0.0 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
2 Hb_002200_060 0.1384586643 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
3 Hb_004800_220 0.1517371024 - - PREDICTED: random slug protein 5 [Jatropha curcas]
4 Hb_009296_060 0.1683815153 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_002960_010 0.1706002022 - - Zeamatin precursor, putative [Ricinus communis]
6 Hb_006538_010 0.1769810359 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_000453_130 0.1783940895 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
8 Hb_000521_360 0.1790925757 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
9 Hb_008097_020 0.1871832452 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_001014_150 0.1884663928 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000699_050 0.1911227072 - - -
12 Hb_005614_030 0.1911949368 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
13 Hb_000343_040 0.1916477073 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
14 Hb_009812_010 0.1946262734 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000684_490 0.1978128328 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
16 Hb_005010_040 0.1984894915 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
17 Hb_038670_010 0.1999360614 - - Major allergen Pru ar, putative [Ricinus communis]
18 Hb_004586_110 0.2005787257 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_009486_100 0.2017734034 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_008145_010 0.2018505487 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000265_080 Hb_000265_080 Hb_002200_060 Hb_002200_060 Hb_000265_080--Hb_002200_060 Hb_004800_220 Hb_004800_220 Hb_000265_080--Hb_004800_220 Hb_009296_060 Hb_009296_060 Hb_000265_080--Hb_009296_060 Hb_002960_010 Hb_002960_010 Hb_000265_080--Hb_002960_010 Hb_006538_010 Hb_006538_010 Hb_000265_080--Hb_006538_010 Hb_000453_130 Hb_000453_130 Hb_000265_080--Hb_000453_130 Hb_000521_360 Hb_000521_360 Hb_002200_060--Hb_000521_360 Hb_000473_070 Hb_000473_070 Hb_002200_060--Hb_000473_070 Hb_002272_230 Hb_002272_230 Hb_002200_060--Hb_002272_230 Hb_006788_150 Hb_006788_150 Hb_002200_060--Hb_006788_150 Hb_002200_060--Hb_004800_220 Hb_008145_010 Hb_008145_010 Hb_004800_220--Hb_008145_010 Hb_008097_020 Hb_008097_020 Hb_004800_220--Hb_008097_020 Hb_025526_080 Hb_025526_080 Hb_004800_220--Hb_025526_080 Hb_012753_190 Hb_012753_190 Hb_004800_220--Hb_012753_190 Hb_000343_040 Hb_000343_040 Hb_009296_060--Hb_000343_040 Hb_000753_180 Hb_000753_180 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_000699_050 Hb_000699_050 Hb_009296_060--Hb_000699_050 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_011440_010 Hb_011440_010 Hb_009296_060--Hb_011440_010 Hb_002811_330 Hb_002811_330 Hb_002960_010--Hb_002811_330 Hb_002960_010--Hb_000521_360 Hb_007676_040 Hb_007676_040 Hb_002960_010--Hb_007676_040 Hb_005168_030 Hb_005168_030 Hb_002960_010--Hb_005168_030 Hb_005542_040 Hb_005542_040 Hb_002960_010--Hb_005542_040 Hb_001345_010 Hb_001345_010 Hb_002960_010--Hb_001345_010 Hb_001014_150 Hb_001014_150 Hb_006538_010--Hb_001014_150 Hb_006538_010--Hb_006788_150 Hb_005010_040 Hb_005010_040 Hb_006538_010--Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_006538_010--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_006538_010--Hb_009627_040 Hb_000661_230 Hb_000661_230 Hb_006538_010--Hb_000661_230 Hb_000453_130--Hb_001014_150 Hb_000847_020 Hb_000847_020 Hb_000453_130--Hb_000847_020 Hb_000453_130--Hb_006538_010 Hb_000453_130--Hb_004800_220 Hb_000453_130--Hb_008145_010 Hb_000445_030 Hb_000445_030 Hb_000453_130--Hb_000445_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0271071 0.916597 1.50845 0.261729 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0617472 0.0728676 0.273911 3.86789 1.16921

CAGE analysis