Hb_000521_360

Information

Type -
Description -
Location Contig521: 291311-310810
Sequence    

Annotation

kegg
ID rcu:RCOM_0827440
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012065500.1
description PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
swissprot
ID O64882
description Beta-glucosidase 17 OS=Arabidopsis thaliana GN=BGLU17 PE=2 SV=1
trembl
ID B9S3R8
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0827440 PE=3 SV=1
Gene Ontology
ID GO:0005576
description beta-glucosidase 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46733: 291959-292490 , PASA_asmbl_46735: 294198-295555 , PASA_asmbl_46738: 306513-306627 , PASA_asmbl_46739: 309069-309384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_360 0.0 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
2 Hb_001345_010 0.0982864737 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
3 Hb_107809_010 0.100537626 - - JHL06P13.14 [Jatropha curcas]
4 Hb_005542_040 0.1007769888 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
5 Hb_001565_010 0.1015598446 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
6 Hb_005276_220 0.1019828591 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
7 Hb_007676_040 0.1026080104 - - cellulose synthase, putative [Ricinus communis]
8 Hb_002960_010 0.1043019851 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_000108_090 0.1196490127 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_003842_010 0.1231343772 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_038670_010 0.1238869628 - - Major allergen Pru ar, putative [Ricinus communis]
12 Hb_001634_080 0.1283940487 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002200_060 0.1325152718 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
14 Hb_000403_110 0.1328120758 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
15 Hb_011472_020 0.1336933177 - - PREDICTED: mucin-17-like [Jatropha curcas]
16 Hb_008783_020 0.1345930325 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
17 Hb_000163_250 0.1361571024 - - unnamed protein product [Vitis vinifera]
18 Hb_007919_030 0.1379037325 - - -
19 Hb_001318_120 0.1451319814 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
20 Hb_010519_020 0.1521794374 - - hypothetical protein JCGZ_19028 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_360 Hb_000521_360 Hb_001345_010 Hb_001345_010 Hb_000521_360--Hb_001345_010 Hb_107809_010 Hb_107809_010 Hb_000521_360--Hb_107809_010 Hb_005542_040 Hb_005542_040 Hb_000521_360--Hb_005542_040 Hb_001565_010 Hb_001565_010 Hb_000521_360--Hb_001565_010 Hb_005276_220 Hb_005276_220 Hb_000521_360--Hb_005276_220 Hb_007676_040 Hb_007676_040 Hb_000521_360--Hb_007676_040 Hb_001345_010--Hb_007676_040 Hb_003842_010 Hb_003842_010 Hb_001345_010--Hb_003842_010 Hb_001345_010--Hb_005542_040 Hb_001345_010--Hb_001565_010 Hb_001345_010--Hb_005276_220 Hb_107809_010--Hb_005542_040 Hb_001634_080 Hb_001634_080 Hb_107809_010--Hb_001634_080 Hb_008783_020 Hb_008783_020 Hb_107809_010--Hb_008783_020 Hb_000108_090 Hb_000108_090 Hb_107809_010--Hb_000108_090 Hb_107809_010--Hb_005276_220 Hb_005542_040--Hb_007676_040 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_005542_040--Hb_000108_090 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_001565_010--Hb_000108_090 Hb_094148_010 Hb_094148_010 Hb_001565_010--Hb_094148_010 Hb_004627_020 Hb_004627_020 Hb_001565_010--Hb_004627_020 Hb_001565_010--Hb_001634_080 Hb_005276_220--Hb_011472_020 Hb_000403_110 Hb_000403_110 Hb_005276_220--Hb_000403_110 Hb_005276_220--Hb_001318_120 Hb_175758_010 Hb_175758_010 Hb_005276_220--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_005276_220--Hb_010519_020 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_007676_040--Hb_000108_090 Hb_007676_040--Hb_001634_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0256727 11.1923 11.1308 3.25289 0.209254 0.124771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219798 0.172966 0.0206967 24.2055 8.35717

CAGE analysis