Hb_000501_110

Information

Type -
Description -
Location Contig501: 85070-87444
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04040g
description POPTRDRAFT_577282; hypothetical protein
nr
ID XP_011013755.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
swissprot
ID Q6R2J8
description Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1
trembl
ID B9IJ50
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s04040g PE=4 SV=2
Gene Ontology
ID GO:0016772
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000501_110 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
2 Hb_002984_040 0.0513656854 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_007676_040 0.0914169435 - - cellulose synthase, putative [Ricinus communis]
4 Hb_003881_020 0.1026482294 - - PREDICTED: stellacyanin-like [Jatropha curcas]
5 Hb_083412_010 0.1174215088 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_005542_040 0.1244685545 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
7 Hb_039022_020 0.1334208299 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_001345_010 0.1381973666 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
9 Hb_187991_010 0.1383181687 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
10 Hb_000108_090 0.1389765962 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
11 Hb_134174_010 0.1394861889 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_000010_150 0.1425215528 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
13 Hb_002960_010 0.1468122323 - - Zeamatin precursor, putative [Ricinus communis]
14 Hb_005168_030 0.1492693475 - - unknown [Zea mays]
15 Hb_000723_050 0.1502733419 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
16 Hb_123560_020 0.1511126665 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
17 Hb_004703_010 0.1515566479 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
18 Hb_001634_080 0.1526172004 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_006681_030 0.1530423523 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
20 Hb_022092_050 0.1543108815 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]

Gene co-expression network

sample Hb_000501_110 Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_000501_110--Hb_002984_040 Hb_007676_040 Hb_007676_040 Hb_000501_110--Hb_007676_040 Hb_003881_020 Hb_003881_020 Hb_000501_110--Hb_003881_020 Hb_083412_010 Hb_083412_010 Hb_000501_110--Hb_083412_010 Hb_005542_040 Hb_005542_040 Hb_000501_110--Hb_005542_040 Hb_039022_020 Hb_039022_020 Hb_000501_110--Hb_039022_020 Hb_002984_040--Hb_003881_020 Hb_002984_040--Hb_007676_040 Hb_134174_010 Hb_134174_010 Hb_002984_040--Hb_134174_010 Hb_123560_020 Hb_123560_020 Hb_002984_040--Hb_123560_020 Hb_006294_030 Hb_006294_030 Hb_002984_040--Hb_006294_030 Hb_007676_040--Hb_005542_040 Hb_001345_010 Hb_001345_010 Hb_007676_040--Hb_001345_010 Hb_000108_090 Hb_000108_090 Hb_007676_040--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_007676_040--Hb_001634_080 Hb_000521_360 Hb_000521_360 Hb_007676_040--Hb_000521_360 Hb_137272_010 Hb_137272_010 Hb_003881_020--Hb_137272_010 Hb_003881_020--Hb_083412_010 Hb_000567_060 Hb_000567_060 Hb_003881_020--Hb_000567_060 Hb_000482_070 Hb_000482_070 Hb_003881_020--Hb_000482_070 Hb_083412_010--Hb_039022_020 Hb_000096_210 Hb_000096_210 Hb_083412_010--Hb_000096_210 Hb_014250_010 Hb_014250_010 Hb_083412_010--Hb_014250_010 Hb_083412_010--Hb_137272_010 Hb_107809_010 Hb_107809_010 Hb_005542_040--Hb_107809_010 Hb_005276_220 Hb_005276_220 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_005542_040--Hb_000108_090 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_039022_020--Hb_011472_020 Hb_039022_020--Hb_000096_210 Hb_039022_020--Hb_005542_040 Hb_039022_020--Hb_001318_120 Hb_166009_010 Hb_166009_010 Hb_039022_020--Hb_166009_010 Hb_000840_050 Hb_000840_050 Hb_039022_020--Hb_000840_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.221831 0.44248 0.105651 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.418157 0.127374

CAGE analysis