Hb_000567_060

Information

Type -
Description -
Location Contig567: 120147-123394
Sequence    

Annotation

kegg
ID rcu:RCOM_1014690
description ubiquitin-protein ligase, putative
nr
ID XP_012091754.1
description PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
swissprot
ID Q9CAG5
description U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1
trembl
ID A0A067JB98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21552 PE=4 SV=1
Gene Ontology
ID GO:0016874
description u-box domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49107: 120279-123080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_060 0.0 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
2 Hb_000018_090 0.089457844 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_003881_020 0.0936041944 - - PREDICTED: stellacyanin-like [Jatropha curcas]
4 Hb_002871_050 0.0949102877 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
5 Hb_137272_010 0.0965827937 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
6 Hb_000482_070 0.1024714242 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
7 Hb_001345_020 0.1141166321 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
8 Hb_005679_110 0.115513809 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_001349_020 0.1211702589 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
10 Hb_068804_070 0.126568284 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
11 Hb_001634_030 0.128562644 - - Receptor like protein 1, putative [Theobroma cacao]
12 Hb_005993_030 0.1315399324 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
13 Hb_001454_290 0.1334619602 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
14 Hb_004551_050 0.1348485235 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
15 Hb_022092_050 0.1357841847 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
16 Hb_000941_010 0.1375078726 - - hypothetical protein RCOM_0504460 [Ricinus communis]
17 Hb_083412_010 0.1418656042 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
18 Hb_009767_030 0.142055213 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
19 Hb_000018_120 0.1436446103 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000696_250 0.1466400153 - - PREDICTED: patellin-6 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_060 Hb_000567_060 Hb_000018_090 Hb_000018_090 Hb_000567_060--Hb_000018_090 Hb_003881_020 Hb_003881_020 Hb_000567_060--Hb_003881_020 Hb_002871_050 Hb_002871_050 Hb_000567_060--Hb_002871_050 Hb_137272_010 Hb_137272_010 Hb_000567_060--Hb_137272_010 Hb_000482_070 Hb_000482_070 Hb_000567_060--Hb_000482_070 Hb_001345_020 Hb_001345_020 Hb_000567_060--Hb_001345_020 Hb_000018_090--Hb_000482_070 Hb_000018_090--Hb_002871_050 Hb_002774_180 Hb_002774_180 Hb_000018_090--Hb_002774_180 Hb_000018_090--Hb_137272_010 Hb_001776_130 Hb_001776_130 Hb_000018_090--Hb_001776_130 Hb_003881_020--Hb_137272_010 Hb_083412_010 Hb_083412_010 Hb_003881_020--Hb_083412_010 Hb_003881_020--Hb_000482_070 Hb_000501_110 Hb_000501_110 Hb_003881_020--Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_003881_020--Hb_002984_040 Hb_002871_050--Hb_000482_070 Hb_005679_110 Hb_005679_110 Hb_002871_050--Hb_005679_110 Hb_001832_240 Hb_001832_240 Hb_002871_050--Hb_001832_240 Hb_002871_050--Hb_003881_020 Hb_006266_010 Hb_006266_010 Hb_137272_010--Hb_006266_010 Hb_137272_010--Hb_000482_070 Hb_000189_160 Hb_000189_160 Hb_137272_010--Hb_000189_160 Hb_007747_160 Hb_007747_160 Hb_000482_070--Hb_007747_160 Hb_000482_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001345_020--Hb_001349_020 Hb_014250_010 Hb_014250_010 Hb_001345_020--Hb_014250_010 Hb_002503_050 Hb_002503_050 Hb_001345_020--Hb_002503_050 Hb_001345_020--Hb_005679_110 Hb_001638_150 Hb_001638_150 Hb_001345_020--Hb_001638_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112302 1.99855 6.49057 2.80163 0 0.0502911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0200976 0 3.89832 1.14278

CAGE analysis