Hb_001776_130

Information

Type -
Description -
Location Contig1776: 98380-98970
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13150g
description hypothetical protein
nr
ID AEE81756.1
description metallothionein [Hevea brasiliensis]
swissprot
ID Q0IMG5
description Metallothionein-like protein 4A OS=Oryza sativa subsp. japonica GN=MT4A PE=2 SV=1
trembl
ID F6KYE0
description Metallothionein OS=Hevea brasiliensis GN=MT2 PE=2 SV=1
Gene Ontology
ID GO:0046872
description metallothionein-like protein type 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17075: 98140-99028
cDNA
(Sanger)
(ID:Location)		 004_C09.ab1: 98175-99028 , 005_I05.ab1: 98405-99028 , 007_L02.ab1: 98178-99028 , 008_N22.ab1: 98393-98939 , 009_K13.ab1: 98405-99028 , 010_O05.ab1: 98196-99028 , 010_P14.ab1: 98405-99034 , 012_N16.ab1: 98405-99022 , 013_M01.ab1: 98405-98780 , 015_M15.ab1: 98531-99028 , 018_A24.ab1: 98149-99028 , 018_N05.ab1: 98405-99028 , 018_O23.ab1: 98157-99028 , 021_H23.ab1: 98266-99028 , 022_E19.ab1: 98757-99031 , 028_J05.ab1: 98405-99028 , 030_N24.ab1: 98175-99022 , 033_O12.ab1: 98405-99006 , 034_H19.ab1: 98405-99022 , 035_J06.ab1: 98189-99031 , 036_F20.ab1: 98204-99042 , 037_E18.ab1: 98405-99028 , 037_J23.ab1: 98405-99028 , 038_L02.ab1: 98405-98780 , 041_O14.ab1: 98311-99022 , 044_E15.ab1: 98405-99033 , 045_L14.ab1: 98175-99027 , 046_N18.ab1: 98405-99028 , 049_A03.ab1: 98405-99028 , 050_O11.ab1: 98405-99022 , 051_G17.ab1: 98405-99028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_130 0.0 - - metallothionein [Hevea brasiliensis]
2 Hb_000018_090 0.1083776579 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002995_010 0.1095304701 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
4 Hb_005834_050 0.1096700724 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
5 Hb_003759_040 0.111459223 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
6 Hb_003688_220 0.1142438298 - - unknown [Populus trichocarpa]
7 Hb_009907_020 0.1165749373 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
8 Hb_002095_050 0.1182330209 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
9 Hb_000731_280 0.1280920956 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
10 Hb_000914_140 0.1284325957 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
11 Hb_028487_040 0.1322760524 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
12 Hb_000482_070 0.1328264481 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
13 Hb_001769_120 0.1355455733 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
14 Hb_001235_160 0.1368632844 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002817_030 0.1400280357 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
16 Hb_000771_040 0.1404386038 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
17 Hb_002311_500 0.1404656613 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
18 Hb_137272_010 0.1407076727 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
19 Hb_011849_030 0.1407160473 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001581_040 0.1409268989 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001776_130 Hb_001776_130 Hb_000018_090 Hb_000018_090 Hb_001776_130--Hb_000018_090 Hb_002995_010 Hb_002995_010 Hb_001776_130--Hb_002995_010 Hb_005834_050 Hb_005834_050 Hb_001776_130--Hb_005834_050 Hb_003759_040 Hb_003759_040 Hb_001776_130--Hb_003759_040 Hb_003688_220 Hb_003688_220 Hb_001776_130--Hb_003688_220 Hb_009907_020 Hb_009907_020 Hb_001776_130--Hb_009907_020 Hb_000482_070 Hb_000482_070 Hb_000018_090--Hb_000482_070 Hb_000567_060 Hb_000567_060 Hb_000018_090--Hb_000567_060 Hb_002871_050 Hb_002871_050 Hb_000018_090--Hb_002871_050 Hb_002774_180 Hb_002774_180 Hb_000018_090--Hb_002774_180 Hb_137272_010 Hb_137272_010 Hb_000018_090--Hb_137272_010 Hb_002995_010--Hb_005834_050 Hb_002311_500 Hb_002311_500 Hb_002995_010--Hb_002311_500 Hb_000035_150 Hb_000035_150 Hb_002995_010--Hb_000035_150 Hb_002817_030 Hb_002817_030 Hb_002995_010--Hb_002817_030 Hb_004567_070 Hb_004567_070 Hb_002995_010--Hb_004567_070 Hb_012691_010 Hb_012691_010 Hb_005834_050--Hb_012691_010 Hb_005834_050--Hb_000035_150 Hb_005834_050--Hb_003759_040 Hb_006615_220 Hb_006615_220 Hb_005834_050--Hb_006615_220 Hb_007120_130 Hb_007120_130 Hb_003759_040--Hb_007120_130 Hb_028487_040 Hb_028487_040 Hb_003759_040--Hb_028487_040 Hb_003759_040--Hb_002995_010 Hb_000914_140 Hb_000914_140 Hb_003759_040--Hb_000914_140 Hb_003688_220--Hb_028487_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_000134_260 Hb_000134_260 Hb_003688_220--Hb_000134_260 Hb_011918_030 Hb_011918_030 Hb_003688_220--Hb_011918_030 Hb_000878_090 Hb_000878_090 Hb_009907_020--Hb_000878_090 Hb_001160_050 Hb_001160_050 Hb_009907_020--Hb_001160_050 Hb_009907_020--Hb_002311_500 Hb_000771_040 Hb_000771_040 Hb_009907_020--Hb_000771_040 Hb_001769_120 Hb_001769_120 Hb_009907_020--Hb_001769_120 Hb_008749_010 Hb_008749_010 Hb_009907_020--Hb_008749_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.829 4768.54 13855.6 5242.74 63.2686 65.042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.396 80.1061 2.60183 3375.79 2693.18

CAGE analysis