Hb_011918_030

Information

Type -
Description -
Location Contig11918: 54200-55888
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04970g
description POPTRDRAFT_575041; hypothetical protein
nr
ID XP_012075845.1
description PREDICTED: nudix hydrolase 4 [Jatropha curcas]
swissprot
ID Q9LE73
description Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1
trembl
ID A0A067KF78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11901 PE=3 SV=1
Gene Ontology
ID GO:0052841
description nudix hydrolase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05669: 54252-55904 , PASA_asmbl_05670: 54996-55312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011918_030 0.0 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
2 Hb_001638_120 0.1011775987 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
3 Hb_008173_130 0.1052107245 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
4 Hb_003688_220 0.1237918645 - - unknown [Populus trichocarpa]
5 Hb_107078_010 0.1246320746 - - -
6 Hb_000134_260 0.1282962652 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_001366_390 0.1358863513 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
8 Hb_189208_060 0.1368950873 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
9 Hb_000308_010 0.1381263989 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
10 Hb_011794_050 0.1400528422 - - transcription factor, putative [Ricinus communis]
11 Hb_004712_090 0.1413544182 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
12 Hb_001025_140 0.1430603606 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
13 Hb_028487_040 0.1460572091 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
14 Hb_000002_370 0.1471485032 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
15 Hb_000905_100 0.1484120905 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
16 Hb_004837_200 0.1485161005 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
17 Hb_000035_140 0.1535541283 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
18 Hb_000059_030 0.1538023377 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
19 Hb_010812_060 0.1547588925 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
20 Hb_004223_080 0.1567931896 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011918_030 Hb_011918_030 Hb_001638_120 Hb_001638_120 Hb_011918_030--Hb_001638_120 Hb_008173_130 Hb_008173_130 Hb_011918_030--Hb_008173_130 Hb_003688_220 Hb_003688_220 Hb_011918_030--Hb_003688_220 Hb_107078_010 Hb_107078_010 Hb_011918_030--Hb_107078_010 Hb_000134_260 Hb_000134_260 Hb_011918_030--Hb_000134_260 Hb_001366_390 Hb_001366_390 Hb_011918_030--Hb_001366_390 Hb_004223_080 Hb_004223_080 Hb_001638_120--Hb_004223_080 Hb_001025_140 Hb_001025_140 Hb_001638_120--Hb_001025_140 Hb_001638_120--Hb_003688_220 Hb_001638_120--Hb_000134_260 Hb_001638_120--Hb_107078_010 Hb_000260_240 Hb_000260_240 Hb_008173_130--Hb_000260_240 Hb_008173_130--Hb_107078_010 Hb_000308_010 Hb_000308_010 Hb_008173_130--Hb_000308_010 Hb_028487_040 Hb_028487_040 Hb_008173_130--Hb_028487_040 Hb_008173_130--Hb_003688_220 Hb_003688_220--Hb_028487_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_003688_220--Hb_000134_260 Hb_107078_010--Hb_000260_240 Hb_000020_080 Hb_000020_080 Hb_107078_010--Hb_000020_080 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_010812_060 Hb_010812_060 Hb_001366_390--Hb_010812_060 Hb_004040_010 Hb_004040_010 Hb_001366_390--Hb_004040_010 Hb_000002_370 Hb_000002_370 Hb_001366_390--Hb_000002_370 Hb_018134_010 Hb_018134_010 Hb_001366_390--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_001366_390--Hb_011794_050 Hb_000185_130 Hb_000185_130 Hb_001366_390--Hb_000185_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84199 159.83 361.052 106.026 5.03329 18.0748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14173 1.14853 0.776766 17.9993 90.5094

CAGE analysis