Hb_000020_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig20: 146062-147132
Sequence    

Annotation

kegg
ID rcu:RCOM_0283740
description asymmetric leaves1 and rough sheath, putative
nr
ID KDP35642.1
description hypothetical protein JCGZ_09080 [Jatropha curcas]
swissprot
ID O80931
description Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1
trembl
ID A0A067KHN5
description MYB family protein OS=Jatropha curcas GN=JCGZ_09080 PE=4 SV=1
Gene Ontology
ID GO:0000793
description transcription factor as1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20143: 143853-147374 , PASA_asmbl_20145: 143145-146205
cDNA
(Sanger)
(ID:Location)		 029_F07.ab1: 143853-146125

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_080 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
2 Hb_012753_150 0.1332060174 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
3 Hb_107078_010 0.1380368553 - - -
4 Hb_000388_040 0.1449572311 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
5 Hb_006060_010 0.1482851412 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
6 Hb_004218_050 0.1508366247 - - annexin [Manihot esculenta]
7 Hb_007545_110 0.1526945095 - - catalytic, putative [Ricinus communis]
8 Hb_003688_220 0.1538184299 - - unknown [Populus trichocarpa]
9 Hb_001638_120 0.1553425834 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
10 Hb_001541_190 0.1564402504 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
11 Hb_000905_100 0.1579810782 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
12 Hb_000907_140 0.1624694601 - - PREDICTED: annexin D5-like [Jatropha curcas]
13 Hb_004223_170 0.1625659875 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
14 Hb_000395_120 0.1638485251 - - Stellacyanin, putative [Ricinus communis]
15 Hb_001761_010 0.1639916774 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
16 Hb_012653_010 0.164098945 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
17 Hb_024973_020 0.1655634131 - - Protein regulator of cytokinesis, putative [Ricinus communis]
18 Hb_004846_230 0.1671791676 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
19 Hb_008775_030 0.1695877899 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
20 Hb_031266_030 0.1698836577 - - Kinase superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000020_080 Hb_000020_080 Hb_012753_150 Hb_012753_150 Hb_000020_080--Hb_012753_150 Hb_107078_010 Hb_107078_010 Hb_000020_080--Hb_107078_010 Hb_000388_040 Hb_000388_040 Hb_000020_080--Hb_000388_040 Hb_006060_010 Hb_006060_010 Hb_000020_080--Hb_006060_010 Hb_004218_050 Hb_004218_050 Hb_000020_080--Hb_004218_050 Hb_007545_110 Hb_007545_110 Hb_000020_080--Hb_007545_110 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_012753_150--Hb_006060_010 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_010267_020 Hb_010267_020 Hb_012753_150--Hb_010267_020 Hb_011918_030 Hb_011918_030 Hb_107078_010--Hb_011918_030 Hb_008173_130 Hb_008173_130 Hb_107078_010--Hb_008173_130 Hb_000260_240 Hb_000260_240 Hb_107078_010--Hb_000260_240 Hb_001638_120 Hb_001638_120 Hb_107078_010--Hb_001638_120 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_003767_030 Hb_003767_030 Hb_000388_040--Hb_003767_030 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_002942_120 Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_010683_070 Hb_010683_070 Hb_004218_050--Hb_010683_070 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_001343_120 Hb_001343_120 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_007545_110--Hb_000260_610 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44396 11.8197 65.925 19.7681 0.318547 3.86405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279354 0.769037 1.82781 4.48461 10.1614

CAGE analysis