Hb_038044_010

Information

Type -
Description -
Location Contig38044: 13013-16165
Sequence    

Annotation

kegg
ID tcc:TCM_036537
description 12-oxophytodienoate reductase 2
nr
ID XP_007020161.1
description 12-oxophytodienoate reductase 2 [Theobroma cacao]
swissprot
ID Q8GYB8
description 12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=1 SV=2
trembl
ID A0A061FJX4
description 12-oxophytodienoate reductase 2 OS=Theobroma cacao GN=TCM_036537 PE=4 SV=1
Gene Ontology
ID GO:0010181
description 12-oxophytodienoate reductase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038044_010 0.0 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
2 Hb_001501_070 0.0863042308 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
3 Hb_029510_130 0.0898380153 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
4 Hb_007545_110 0.1055797382 - - catalytic, putative [Ricinus communis]
5 Hb_024973_020 0.106156138 - - Protein regulator of cytokinesis, putative [Ricinus communis]
6 Hb_001478_020 0.1067219866 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
7 Hb_002942_120 0.121347851 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
8 Hb_010180_030 0.1257657608 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
9 Hb_000365_210 0.131084431 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
10 Hb_001780_080 0.1359197278 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
11 Hb_007943_180 0.1386369062 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
12 Hb_001761_010 0.1386794113 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
13 Hb_000288_090 0.1421727218 - - unnamed protein product [Vitis vinifera]
14 Hb_003784_040 0.1458100431 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
15 Hb_003095_100 0.1479880154 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008406_100 0.1504612903 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
17 Hb_004846_230 0.1522247898 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
18 Hb_000088_240 0.1527649772 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_002007_280 0.1530263609 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
20 Hb_000139_280 0.153896088 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_038044_010 Hb_038044_010 Hb_001501_070 Hb_001501_070 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_024973_020 Hb_024973_020 Hb_038044_010--Hb_024973_020 Hb_001478_020 Hb_001478_020 Hb_038044_010--Hb_001478_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_001501_070--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_029510_130 Hb_001501_070--Hb_024973_020 Hb_029510_130--Hb_001478_020 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_029510_130--Hb_024973_020 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_000260_610 Hb_000260_610 Hb_007545_110--Hb_000260_610 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_008406_100 Hb_008406_100 Hb_024973_020--Hb_008406_100 Hb_001761_010 Hb_001761_010 Hb_024973_020--Hb_001761_010 Hb_001478_020--Hb_010180_030 Hb_001780_080 Hb_001780_080 Hb_001478_020--Hb_001780_080 Hb_003784_040 Hb_003784_040 Hb_001478_020--Hb_003784_040 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.308492 0.945296 12.2004 3.07029 0.391724 0.254009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.56332 0.54744 0.635417 1.47866 1.46923

CAGE analysis