Hb_004846_230

Information

Type -
Description -
Location Contig4846: 274672-276381
Sequence    

Annotation

kegg
ID rcu:RCOM_1442130
description Chaperone protein dnaJ 8, chloroplast precursor, putative
nr
ID XP_002512737.1
description Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SAG8
description Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1
trembl
ID B9RGM8
description Chaperone protein dnaJ 8, chloroplast, putative OS=Ricinus communis GN=RCOM_1442130 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chaperone protein dnaj chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44930: 274703-276367 , PASA_asmbl_44931: 274828-275730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_230 0.0 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
2 Hb_006788_090 0.1114241465 - - -
3 Hb_002942_120 0.1153429355 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
4 Hb_001396_040 0.121275935 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
5 Hb_000500_330 0.1267255425 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
6 Hb_002794_040 0.1305920284 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
7 Hb_004218_050 0.141203053 - - annexin [Manihot esculenta]
8 Hb_007545_110 0.1430052578 - - catalytic, putative [Ricinus communis]
9 Hb_002435_090 0.148770914 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_000392_240 0.1509087312 - - DNA binding protein, putative [Ricinus communis]
11 Hb_038044_010 0.1522247898 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_107078_010 0.1546216054 - - -
13 Hb_000110_240 0.1546217145 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
14 Hb_001579_190 0.1555555326 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001343_120 0.1561014578 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000032_200 0.1583942124 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_000347_140 0.1608657434 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000042_390 0.1631606858 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
19 Hb_000207_140 0.1632373883 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
20 Hb_024973_020 0.1634692807 - - Protein regulator of cytokinesis, putative [Ricinus communis]

Gene co-expression network

sample Hb_004846_230 Hb_004846_230 Hb_006788_090 Hb_006788_090 Hb_004846_230--Hb_006788_090 Hb_002942_120 Hb_002942_120 Hb_004846_230--Hb_002942_120 Hb_001396_040 Hb_001396_040 Hb_004846_230--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_004846_230--Hb_000500_330 Hb_002794_040 Hb_002794_040 Hb_004846_230--Hb_002794_040 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_006788_090--Hb_001396_040 Hb_006788_090--Hb_000500_330 Hb_006788_090--Hb_002942_120 Hb_000483_270 Hb_000483_270 Hb_006788_090--Hb_000483_270 Hb_000392_240 Hb_000392_240 Hb_006788_090--Hb_000392_240 Hb_002942_120--Hb_004218_050 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_000134_260 Hb_000134_260 Hb_001396_040--Hb_000134_260 Hb_001001_010 Hb_001001_010 Hb_001396_040--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_001396_040--Hb_000349_170 Hb_000110_240 Hb_000110_240 Hb_000500_330--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000500_330--Hb_000494_010 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_005116_130 Hb_005116_130 Hb_000500_330--Hb_005116_130 Hb_046590_010 Hb_046590_010 Hb_000500_330--Hb_046590_010 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_002794_040--Hb_000392_240 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_000046_520 Hb_000046_520 Hb_002794_040--Hb_000046_520 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_010683_070 Hb_010683_070 Hb_004218_050--Hb_010683_070 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6527 55.3857 398.172 53.3573 4.07731 8.83244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7521 13.62 7.1641 29.7313 77.5135

CAGE analysis