Hb_000110_240

Information

Type -
Description -
Location Contig110: 291691-294627
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13730g
description POPTRDRAFT_225580; hypothetical protein
nr
ID XP_012082067.1
description PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18310 PE=4 SV=1
Gene Ontology
ID GO:0019288
description PREDICTED: uncharacterized protein LOC105642006 isoform X3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_240 0.0 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
2 Hb_000494_010 0.0818360418 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
3 Hb_005116_130 0.0924457348 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
4 Hb_000500_330 0.0973670754 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
5 Hb_046590_010 0.0978295463 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
6 Hb_001579_190 0.1032315121 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001442_050 0.1162257785 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
8 Hb_000188_070 0.1341735851 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_002540_060 0.1342376696 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
10 Hb_008643_220 0.1355566691 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
11 Hb_003077_010 0.136448352 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001655_080 0.1367221185 - - Purple acid phosphatase precursor, putative [Ricinus communis]
13 Hb_004218_050 0.1379501299 - - annexin [Manihot esculenta]
14 Hb_001638_190 0.1403807683 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
15 Hb_002843_130 0.1424103535 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
16 Hb_000028_150 0.1436655483 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
17 Hb_002918_170 0.1444528546 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
18 Hb_002027_100 0.1447871619 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000358_160 0.1460186352 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
20 Hb_000152_650 0.1486890253 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000110_240 Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000110_240--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_000110_240--Hb_005116_130 Hb_000500_330 Hb_000500_330 Hb_000110_240--Hb_000500_330 Hb_046590_010 Hb_046590_010 Hb_000110_240--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000110_240--Hb_001579_190 Hb_001442_050 Hb_001442_050 Hb_000110_240--Hb_001442_050 Hb_000494_010--Hb_005116_130 Hb_000494_010--Hb_046590_010 Hb_000494_010--Hb_001579_190 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_000494_010--Hb_000500_330 Hb_005116_130--Hb_046590_010 Hb_000188_070 Hb_000188_070 Hb_005116_130--Hb_000188_070 Hb_005116_130--Hb_001442_050 Hb_001655_080 Hb_001655_080 Hb_005116_130--Hb_001655_080 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_000500_330--Hb_005116_130 Hb_000500_330--Hb_046590_010 Hb_046590_010--Hb_001655_080 Hb_046590_010--Hb_000188_070 Hb_104014_010 Hb_104014_010 Hb_046590_010--Hb_104014_010 Hb_008643_220 Hb_008643_220 Hb_001579_190--Hb_008643_220 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_010683_070 Hb_010683_070 Hb_001579_190--Hb_010683_070 Hb_002027_100 Hb_002027_100 Hb_001442_050--Hb_002027_100 Hb_000345_400 Hb_000345_400 Hb_001442_050--Hb_000345_400 Hb_000358_160 Hb_000358_160 Hb_001442_050--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_001442_050--Hb_000123_360 Hb_110266_010 Hb_110266_010 Hb_001442_050--Hb_110266_010 Hb_001638_190 Hb_001638_190 Hb_001442_050--Hb_001638_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468047 4.59524 45.7727 6.4285 0.908832 0.514178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267714 0.315863 0.19503 2.04172 13.8808

CAGE analysis