Hb_010407_150

Information

Type transcription factor
Description TF Family: MYB
Location Contig10407: 158845-160347
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16660g
description POPTRDRAFT_832837; hypothetical protein
nr
ID XP_002311670.1
description hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID B9HKG6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16660g PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_150 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
2 Hb_001001_010 0.0596910712 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
3 Hb_006789_030 0.1064521313 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
4 Hb_004567_070 0.1142420567 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005695_070 0.1199423246 - - Cysteine-rich RLK 29 [Theobroma cacao]
6 Hb_005834_050 0.1205225698 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
7 Hb_002995_010 0.1205409142 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
8 Hb_003777_120 0.128475777 - - -
9 Hb_001579_190 0.1285818978 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000035_150 0.1292734906 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
11 Hb_149985_030 0.1336999991 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
12 Hb_007076_010 0.1337868043 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_034585_070 0.133882422 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
14 Hb_003688_220 0.1353635999 - - unknown [Populus trichocarpa]
15 Hb_003992_130 0.1354630115 - - unnamed protein product [Vitis vinifera]
16 Hb_002311_500 0.1392412168 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
17 Hb_151103_010 0.1408997539 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000349_170 0.1414623338 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
19 Hb_140000_010 0.1440225603 - - receptor-kinase, putative [Ricinus communis]
20 Hb_007643_060 0.1450020035 - - -

Gene co-expression network

sample Hb_010407_150 Hb_010407_150 Hb_001001_010 Hb_001001_010 Hb_010407_150--Hb_001001_010 Hb_006789_030 Hb_006789_030 Hb_010407_150--Hb_006789_030 Hb_004567_070 Hb_004567_070 Hb_010407_150--Hb_004567_070 Hb_005695_070 Hb_005695_070 Hb_010407_150--Hb_005695_070 Hb_005834_050 Hb_005834_050 Hb_010407_150--Hb_005834_050 Hb_002995_010 Hb_002995_010 Hb_010407_150--Hb_002995_010 Hb_001001_010--Hb_005695_070 Hb_149985_030 Hb_149985_030 Hb_001001_010--Hb_149985_030 Hb_000349_170 Hb_000349_170 Hb_001001_010--Hb_000349_170 Hb_001001_010--Hb_002995_010 Hb_007076_010 Hb_007076_010 Hb_001001_010--Hb_007076_010 Hb_031685_010 Hb_031685_010 Hb_006789_030--Hb_031685_010 Hb_029095_010 Hb_029095_010 Hb_006789_030--Hb_029095_010 Hb_001544_060 Hb_001544_060 Hb_006789_030--Hb_001544_060 Hb_034585_070 Hb_034585_070 Hb_006789_030--Hb_034585_070 Hb_001898_100 Hb_001898_100 Hb_006789_030--Hb_001898_100 Hb_002311_500 Hb_002311_500 Hb_004567_070--Hb_002311_500 Hb_003777_120 Hb_003777_120 Hb_004567_070--Hb_003777_120 Hb_000002_370 Hb_000002_370 Hb_004567_070--Hb_000002_370 Hb_002053_180 Hb_002053_180 Hb_004567_070--Hb_002053_180 Hb_001571_080 Hb_001571_080 Hb_004567_070--Hb_001571_080 Hb_005695_070--Hb_149985_030 Hb_005695_070--Hb_000349_170 Hb_010267_020 Hb_010267_020 Hb_005695_070--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_005695_070--Hb_000200_270 Hb_022406_010 Hb_022406_010 Hb_005695_070--Hb_022406_010 Hb_005834_050--Hb_002995_010 Hb_012691_010 Hb_012691_010 Hb_005834_050--Hb_012691_010 Hb_001776_130 Hb_001776_130 Hb_005834_050--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_005834_050--Hb_000035_150 Hb_003759_040 Hb_003759_040 Hb_005834_050--Hb_003759_040 Hb_006615_220 Hb_006615_220 Hb_005834_050--Hb_006615_220 Hb_002995_010--Hb_002311_500 Hb_002995_010--Hb_001776_130 Hb_002995_010--Hb_000035_150 Hb_002817_030 Hb_002817_030 Hb_002995_010--Hb_002817_030 Hb_002995_010--Hb_004567_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.889822 3.692 0.726685 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419941 0 0 0.344232 0.819008

CAGE analysis