Hb_004567_070

Information

Type -
Description -
Location Contig4567: 45804-51343
Sequence    

Annotation

kegg
ID rcu:RCOM_1719380
description hypothetical protein
nr
ID XP_002521077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S508
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1719380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43444: 45772-46578 , PASA_asmbl_43445: 46732-47565 , PASA_asmbl_43446: 46922-47565 , PASA_asmbl_43447: 47822-47976 , PASA_asmbl_43448: 48033-49009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002311_500 0.0813208489 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
3 Hb_003777_120 0.0948183871 - - -
4 Hb_000002_370 0.1010492791 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
5 Hb_002053_180 0.1105515849 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
6 Hb_010407_150 0.1142420567 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
7 Hb_001571_080 0.1158261839 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
8 Hb_004223_080 0.1175095631 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_002995_010 0.1187811515 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
10 Hb_003992_130 0.1190956998 - - unnamed protein product [Vitis vinifera]
11 Hb_000199_040 0.1211595379 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_002817_030 0.1218154733 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
13 Hb_007237_020 0.1227537404 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
14 Hb_009907_020 0.1249477057 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
15 Hb_003688_220 0.1262162305 - - unknown [Populus trichocarpa]
16 Hb_000905_100 0.1302443735 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
17 Hb_001926_020 0.1314012679 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
18 Hb_001001_010 0.1330812788 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
19 Hb_000027_160 0.1336402984 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
20 Hb_000349_250 0.134017436 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]

Gene co-expression network

sample Hb_004567_070 Hb_004567_070 Hb_002311_500 Hb_002311_500 Hb_004567_070--Hb_002311_500 Hb_003777_120 Hb_003777_120 Hb_004567_070--Hb_003777_120 Hb_000002_370 Hb_000002_370 Hb_004567_070--Hb_000002_370 Hb_002053_180 Hb_002053_180 Hb_004567_070--Hb_002053_180 Hb_010407_150 Hb_010407_150 Hb_004567_070--Hb_010407_150 Hb_001571_080 Hb_001571_080 Hb_004567_070--Hb_001571_080 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_000200_270 Hb_000200_270 Hb_002311_500--Hb_000200_270 Hb_074966_010 Hb_074966_010 Hb_003777_120--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_003777_120--Hb_001926_020 Hb_032731_010 Hb_032731_010 Hb_003777_120--Hb_032731_010 Hb_059318_010 Hb_059318_010 Hb_003777_120--Hb_059318_010 Hb_000199_040 Hb_000199_040 Hb_003777_120--Hb_000199_040 Hb_003777_120--Hb_000002_370 Hb_000002_370--Hb_000199_040 Hb_000103_370 Hb_000103_370 Hb_000002_370--Hb_000103_370 Hb_000002_370--Hb_002053_180 Hb_000836_090 Hb_000836_090 Hb_000002_370--Hb_000836_090 Hb_002053_180--Hb_000199_040 Hb_000627_040 Hb_000627_040 Hb_002053_180--Hb_000627_040 Hb_007237_020 Hb_007237_020 Hb_002053_180--Hb_007237_020 Hb_006922_020 Hb_006922_020 Hb_002053_180--Hb_006922_020 Hb_002053_180--Hb_000836_090 Hb_002490_060 Hb_002490_060 Hb_002053_180--Hb_002490_060 Hb_001001_010 Hb_001001_010 Hb_010407_150--Hb_001001_010 Hb_006789_030 Hb_006789_030 Hb_010407_150--Hb_006789_030 Hb_005695_070 Hb_005695_070 Hb_010407_150--Hb_005695_070 Hb_005834_050 Hb_005834_050 Hb_010407_150--Hb_005834_050 Hb_010407_150--Hb_002995_010 Hb_005568_140 Hb_005568_140 Hb_001571_080--Hb_005568_140 Hb_001085_160 Hb_001085_160 Hb_001571_080--Hb_001085_160 Hb_002918_220 Hb_002918_220 Hb_001571_080--Hb_002918_220 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_000027_160 Hb_000027_160 Hb_001571_080--Hb_000027_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.302458 1.23582 0.434361 0 0.0105114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100251 0.285837

CAGE analysis