Hb_002200_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2200: 11663-12571
Sequence    

Annotation

kegg
ID rcu:RCOM_0137680
description hypothetical protein
nr
ID XP_002526146.1
description hypothetical protein RCOM_0137680 [Ricinus communis]
swissprot
ID P68349
description Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1
trembl
ID B9SJH7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0137680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22674: 11552-11662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_020 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
2 Hb_000392_170 0.1023461408 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
3 Hb_002311_500 0.1050133741 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
4 Hb_000200_270 0.1132591185 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
5 Hb_015037_010 0.1202060555 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
6 Hb_000856_230 0.12743976 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
7 Hb_002540_100 0.1343795595 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_004316_020 0.1379041208 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
9 Hb_004712_090 0.1398319386 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
10 Hb_027337_010 0.1404924566 - - Potassium transporter, putative [Ricinus communis]
11 Hb_002995_010 0.1420829287 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
12 Hb_024714_090 0.1444643958 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
13 Hb_151103_010 0.144832135 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009907_020 0.1457262808 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
15 Hb_007076_010 0.1464579879 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_010267_020 0.1486967405 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
17 Hb_012753_150 0.1507631787 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
18 Hb_009339_040 0.1509959253 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000395_120 0.1520141443 - - Stellacyanin, putative [Ricinus communis]
20 Hb_005695_070 0.1532445057 - - Cysteine-rich RLK 29 [Theobroma cacao]

Gene co-expression network

sample Hb_002200_020 Hb_002200_020 Hb_000392_170 Hb_000392_170 Hb_002200_020--Hb_000392_170 Hb_002311_500 Hb_002311_500 Hb_002200_020--Hb_002311_500 Hb_000200_270 Hb_000200_270 Hb_002200_020--Hb_000200_270 Hb_015037_010 Hb_015037_010 Hb_002200_020--Hb_015037_010 Hb_000856_230 Hb_000856_230 Hb_002200_020--Hb_000856_230 Hb_002540_100 Hb_002540_100 Hb_002200_020--Hb_002540_100 Hb_004316_020 Hb_004316_020 Hb_000392_170--Hb_004316_020 Hb_000392_170--Hb_002311_500 Hb_004223_080 Hb_004223_080 Hb_000392_170--Hb_004223_080 Hb_000392_170--Hb_000856_230 Hb_000392_170--Hb_000200_270 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002311_500--Hb_000200_270 Hb_010267_020 Hb_010267_020 Hb_000200_270--Hb_010267_020 Hb_000200_270--Hb_000856_230 Hb_002918_220 Hb_002918_220 Hb_000200_270--Hb_002918_220 Hb_005695_070 Hb_005695_070 Hb_000200_270--Hb_005695_070 Hb_009421_090 Hb_009421_090 Hb_000200_270--Hb_009421_090 Hb_001430_010 Hb_001430_010 Hb_015037_010--Hb_001430_010 Hb_070634_010 Hb_070634_010 Hb_015037_010--Hb_070634_010 Hb_015037_010--Hb_000392_170 Hb_008806_040 Hb_008806_040 Hb_015037_010--Hb_008806_040 Hb_006873_010 Hb_006873_010 Hb_015037_010--Hb_006873_010 Hb_000856_230--Hb_009421_090 Hb_014700_020 Hb_014700_020 Hb_000856_230--Hb_014700_020 Hb_000856_230--Hb_002540_100 Hb_000856_230--Hb_004316_020 Hb_000371_030 Hb_000371_030 Hb_000856_230--Hb_000371_030 Hb_002540_100--Hb_000371_030 Hb_002540_100--Hb_004316_020 Hb_003847_090 Hb_003847_090 Hb_002540_100--Hb_003847_090 Hb_005599_010 Hb_005599_010 Hb_002540_100--Hb_005599_010 Hb_002540_100--Hb_006873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.12912 20.4394 8.64103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.228615 0.13484 0 1.75767 1.55172

CAGE analysis