Hb_007076_010

Information

Type -
Description -
Location Contig7076: 43868-47333
Sequence    

Annotation

kegg
ID rcu:RCOM_1777340
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002512205.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID A0AAR7
description Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Lotus japonicus GN=CCAMK PE=1 SV=1
trembl
ID B9REN6
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1777340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium and calcium calmodulin-dependent serine threonine-protein kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55160: 44476-44834 , PASA_asmbl_55161: 46058-46404 , PASA_asmbl_55162: 46468-47352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007076_010 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_151103_010 0.0427229518 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003688_220 0.129195104 - - unknown [Populus trichocarpa]
4 Hb_001001_010 0.131586124 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
5 Hb_010407_150 0.1337868043 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
6 Hb_002200_020 0.1464579879 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
7 Hb_001396_040 0.147190007 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
8 Hb_000027_160 0.1495437787 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
9 Hb_000392_170 0.1522088772 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
10 Hb_004567_070 0.1530234108 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002311_500 0.1542415548 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
12 Hb_000134_260 0.1544057364 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_000175_300 0.1618988801 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
14 Hb_000907_140 0.1636365304 - - PREDICTED: annexin D5-like [Jatropha curcas]
15 Hb_028487_040 0.1676894654 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
16 Hb_011794_050 0.1681280923 - - transcription factor, putative [Ricinus communis]
17 Hb_003777_120 0.1688664595 - - -
18 Hb_002053_180 0.1696826146 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
19 Hb_000567_330 0.1698006737 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
20 Hb_000905_100 0.1706367175 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007076_010 Hb_007076_010 Hb_151103_010 Hb_151103_010 Hb_007076_010--Hb_151103_010 Hb_003688_220 Hb_003688_220 Hb_007076_010--Hb_003688_220 Hb_001001_010 Hb_001001_010 Hb_007076_010--Hb_001001_010 Hb_010407_150 Hb_010407_150 Hb_007076_010--Hb_010407_150 Hb_002200_020 Hb_002200_020 Hb_007076_010--Hb_002200_020 Hb_001396_040 Hb_001396_040 Hb_007076_010--Hb_001396_040 Hb_151103_010--Hb_003688_220 Hb_151103_010--Hb_010407_150 Hb_151103_010--Hb_001001_010 Hb_151103_010--Hb_002200_020 Hb_028487_040 Hb_028487_040 Hb_151103_010--Hb_028487_040 Hb_003688_220--Hb_028487_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_000134_260 Hb_000134_260 Hb_003688_220--Hb_000134_260 Hb_011918_030 Hb_011918_030 Hb_003688_220--Hb_011918_030 Hb_001001_010--Hb_010407_150 Hb_005695_070 Hb_005695_070 Hb_001001_010--Hb_005695_070 Hb_149985_030 Hb_149985_030 Hb_001001_010--Hb_149985_030 Hb_000349_170 Hb_000349_170 Hb_001001_010--Hb_000349_170 Hb_002995_010 Hb_002995_010 Hb_001001_010--Hb_002995_010 Hb_006789_030 Hb_006789_030 Hb_010407_150--Hb_006789_030 Hb_004567_070 Hb_004567_070 Hb_010407_150--Hb_004567_070 Hb_010407_150--Hb_005695_070 Hb_005834_050 Hb_005834_050 Hb_010407_150--Hb_005834_050 Hb_010407_150--Hb_002995_010 Hb_000392_170 Hb_000392_170 Hb_002200_020--Hb_000392_170 Hb_002311_500 Hb_002311_500 Hb_002200_020--Hb_002311_500 Hb_000200_270 Hb_000200_270 Hb_002200_020--Hb_000200_270 Hb_015037_010 Hb_015037_010 Hb_002200_020--Hb_015037_010 Hb_000856_230 Hb_000856_230 Hb_002200_020--Hb_000856_230 Hb_002540_100 Hb_002540_100 Hb_002200_020--Hb_002540_100 Hb_004846_230 Hb_004846_230 Hb_001396_040--Hb_004846_230 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_006788_090 Hb_006788_090 Hb_001396_040--Hb_006788_090 Hb_001396_040--Hb_000134_260 Hb_001396_040--Hb_001001_010 Hb_001396_040--Hb_000349_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.412948 1.40572 0.463996 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0856056 0.0224503 0 0.0984727 0.28269

CAGE analysis