Hb_000134_260

Information

Type transcription factor
Description TF Family: bHLH
Location Contig134: 229348-232699
Sequence    

Annotation

kegg
ID rcu:RCOM_1526050
description DNA binding protein, putative
nr
ID XP_002513187.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q66GR3
description Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1
trembl
ID B9RHG8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1526050 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh130-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09610: 229355-232847 , PASA_asmbl_09611: 229355-232677 , PASA_asmbl_09612: 232258-232655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_260 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_004712_090 0.089997807 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
3 Hb_004551_010 0.1080446304 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_003688_220 0.1199073898 - - unknown [Populus trichocarpa]
5 Hb_002374_200 0.1245491898 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
6 Hb_011918_030 0.1282962652 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
7 Hb_000035_140 0.1341189447 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
8 Hb_031266_020 0.1356890683 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
9 Hb_001638_120 0.1359556415 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
10 Hb_001396_040 0.1379410179 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
11 Hb_004970_070 0.1394285409 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
12 Hb_000059_030 0.14018161 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
13 Hb_000308_010 0.1429695786 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
14 Hb_001660_080 0.1441962002 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
15 Hb_189208_060 0.1449622295 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
16 Hb_000454_080 0.1464386318 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
17 Hb_001001_010 0.1471907806 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
18 Hb_001007_090 0.1482334695 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
19 Hb_000392_170 0.1485206569 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_005695_070 0.1492727828 - - Cysteine-rich RLK 29 [Theobroma cacao]

Gene co-expression network

sample Hb_000134_260 Hb_000134_260 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_000392_170 Hb_000392_170 Hb_004712_090--Hb_000392_170 Hb_004970_070 Hb_004970_070 Hb_004712_090--Hb_004970_070 Hb_000059_030 Hb_000059_030 Hb_004712_090--Hb_000059_030 Hb_000856_230 Hb_000856_230 Hb_004712_090--Hb_000856_230 Hb_000308_010 Hb_000308_010 Hb_004712_090--Hb_000308_010 Hb_031266_020 Hb_031266_020 Hb_004551_010--Hb_031266_020 Hb_009252_090 Hb_009252_090 Hb_004551_010--Hb_009252_090 Hb_001660_080 Hb_001660_080 Hb_004551_010--Hb_001660_080 Hb_004551_010--Hb_002374_200 Hb_004551_010--Hb_000035_140 Hb_028487_040 Hb_028487_040 Hb_003688_220--Hb_028487_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_003688_220--Hb_011918_030 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_001638_120 Hb_001638_120 Hb_011918_030--Hb_001638_120 Hb_008173_130 Hb_008173_130 Hb_011918_030--Hb_008173_130 Hb_107078_010 Hb_107078_010 Hb_011918_030--Hb_107078_010 Hb_001366_390 Hb_001366_390 Hb_011918_030--Hb_001366_390 Hb_115962_010 Hb_115962_010 Hb_000035_140--Hb_115962_010 Hb_000035_140--Hb_001660_080 Hb_189208_060 Hb_189208_060 Hb_000035_140--Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_000035_140--Hb_001160_050 Hb_012496_020 Hb_012496_020 Hb_000035_140--Hb_012496_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.905003 37.0437 96.1305 25.4952 0.488499 0.707861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.799761 1.84964 0.721901 4.28138 11.9453

CAGE analysis