Hb_001366_390

Information

Type -
Description -
Location Contig1366: 315779-317501
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10660g
description POPTRDRAFT_572511; hypothetical protein
nr
ID XP_012083030.1
description PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K968
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10110: 315810-317496
cDNA
(Sanger)
(ID:Location)		 025_C03.ab1: 316705-317496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_390 0.0 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
2 Hb_010812_060 0.0943991459 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
3 Hb_004040_010 0.1148821406 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
4 Hb_000002_370 0.1151606712 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
5 Hb_018134_010 0.1154106376 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
6 Hb_011794_050 0.1164194067 - - transcription factor, putative [Ricinus communis]
7 Hb_000185_130 0.1204103951 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
8 Hb_007130_020 0.1227480183 - - -
9 Hb_000836_090 0.1228012156 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_001254_020 0.1254714227 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
11 Hb_008019_010 0.128158075 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
12 Hb_000103_370 0.1282462278 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
13 Hb_054926_010 0.1321771173 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_000049_280 0.1340062503 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
15 Hb_011918_030 0.1358863513 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
16 Hb_006188_020 0.1370024108 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
17 Hb_002609_290 0.1372355072 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
18 Hb_007632_230 0.1393492268 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
19 Hb_003071_050 0.1397163901 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
20 Hb_189208_060 0.1413443964 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_390 Hb_001366_390 Hb_010812_060 Hb_010812_060 Hb_001366_390--Hb_010812_060 Hb_004040_010 Hb_004040_010 Hb_001366_390--Hb_004040_010 Hb_000002_370 Hb_000002_370 Hb_001366_390--Hb_000002_370 Hb_018134_010 Hb_018134_010 Hb_001366_390--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_001366_390--Hb_011794_050 Hb_000185_130 Hb_000185_130 Hb_001366_390--Hb_000185_130 Hb_000071_090 Hb_000071_090 Hb_010812_060--Hb_000071_090 Hb_002609_290 Hb_002609_290 Hb_010812_060--Hb_002609_290 Hb_007130_020 Hb_007130_020 Hb_010812_060--Hb_007130_020 Hb_089305_010 Hb_089305_010 Hb_010812_060--Hb_089305_010 Hb_001254_020 Hb_001254_020 Hb_010812_060--Hb_001254_020 Hb_008019_010 Hb_008019_010 Hb_004040_010--Hb_008019_010 Hb_054926_010 Hb_054926_010 Hb_004040_010--Hb_054926_010 Hb_004040_010--Hb_018134_010 Hb_004040_010--Hb_011794_050 Hb_000319_010 Hb_000319_010 Hb_004040_010--Hb_000319_010 Hb_000878_090 Hb_000878_090 Hb_004040_010--Hb_000878_090 Hb_000199_040 Hb_000199_040 Hb_000002_370--Hb_000199_040 Hb_000103_370 Hb_000103_370 Hb_000002_370--Hb_000103_370 Hb_003777_120 Hb_003777_120 Hb_000002_370--Hb_003777_120 Hb_002053_180 Hb_002053_180 Hb_000002_370--Hb_002053_180 Hb_000836_090 Hb_000836_090 Hb_000002_370--Hb_000836_090 Hb_004567_070 Hb_004567_070 Hb_000002_370--Hb_004567_070 Hb_018134_010--Hb_008019_010 Hb_018134_010--Hb_054926_010 Hb_111997_010 Hb_111997_010 Hb_018134_010--Hb_111997_010 Hb_001677_170 Hb_001677_170 Hb_018134_010--Hb_001677_170 Hb_059318_010 Hb_059318_010 Hb_018134_010--Hb_059318_010 Hb_189208_060 Hb_189208_060 Hb_011794_050--Hb_189208_060 Hb_002374_030 Hb_002374_030 Hb_011794_050--Hb_002374_030 Hb_011794_050--Hb_059318_010 Hb_026016_010 Hb_026016_010 Hb_011794_050--Hb_026016_010 Hb_074966_010 Hb_074966_010 Hb_011794_050--Hb_074966_010 Hb_000588_050 Hb_000588_050 Hb_000185_130--Hb_000588_050 Hb_000185_130--Hb_000103_370 Hb_008895_020 Hb_008895_020 Hb_000185_130--Hb_008895_020 Hb_000185_130--Hb_000836_090 Hb_124677_090 Hb_124677_090 Hb_000185_130--Hb_124677_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00151 80.9467 126.96 75.8779 2.10821 5.7229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.803933 0.535174 0.228594 6.16513 66.6409

CAGE analysis