Hb_000588_050

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig588: 27023-29520
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02580g
description POPTRDRAFT_655813; hypothetical protein
nr
ID XP_002311966.2
description hypothetical protein POPTR_0008s02580g [Populus trichocarpa]
swissprot
ID Q9LZS0
description Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL PE=2 SV=1
trembl
ID B9HL34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02580g PE=4 SV=2
Gene Ontology
ID GO:0005488
description trihelix transcription factor ptl-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50012: 27053-29360 , PASA_asmbl_50013: 29441-29648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000588_050 0.0 transcription factor TF Family: Trihelix hypothetical protein POPTR_0008s02580g [Populus trichocarpa]
2 Hb_000185_130 0.0838561247 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
3 Hb_000049_280 0.1252433765 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
4 Hb_001366_390 0.1422380271 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
5 Hb_005643_040 0.1446271115 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000103_370 0.1559710739 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
7 Hb_000928_280 0.1560378027 - - hypothetical protein VITISV_005300 [Vitis vinifera]
8 Hb_000836_090 0.1566475786 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
9 Hb_004531_170 0.1611511319 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
10 Hb_001141_350 0.1632627366 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
11 Hb_008019_010 0.1632915209 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
12 Hb_008895_020 0.1647922828 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
13 Hb_000002_370 0.1661965669 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
14 Hb_124677_090 0.1666695532 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004223_240 0.1677123921 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
16 Hb_018134_010 0.1681889057 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
17 Hb_054926_010 0.1682087898 - - glutamate receptor 2 plant, putative [Ricinus communis]
18 Hb_004117_370 0.1685348442 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
19 Hb_007130_020 0.1688814393 - - -
20 Hb_007632_230 0.1701841898 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000588_050 Hb_000588_050 Hb_000185_130 Hb_000185_130 Hb_000588_050--Hb_000185_130 Hb_000049_280 Hb_000049_280 Hb_000588_050--Hb_000049_280 Hb_001366_390 Hb_001366_390 Hb_000588_050--Hb_001366_390 Hb_005643_040 Hb_005643_040 Hb_000588_050--Hb_005643_040 Hb_000103_370 Hb_000103_370 Hb_000588_050--Hb_000103_370 Hb_000928_280 Hb_000928_280 Hb_000588_050--Hb_000928_280 Hb_000185_130--Hb_000103_370 Hb_008895_020 Hb_008895_020 Hb_000185_130--Hb_008895_020 Hb_000185_130--Hb_001366_390 Hb_000836_090 Hb_000836_090 Hb_000185_130--Hb_000836_090 Hb_124677_090 Hb_124677_090 Hb_000185_130--Hb_124677_090 Hb_015934_060 Hb_015934_060 Hb_000049_280--Hb_015934_060 Hb_007130_020 Hb_007130_020 Hb_000049_280--Hb_007130_020 Hb_002311_280 Hb_002311_280 Hb_000049_280--Hb_002311_280 Hb_001141_350 Hb_001141_350 Hb_000049_280--Hb_001141_350 Hb_000049_280--Hb_000836_090 Hb_004531_170 Hb_004531_170 Hb_000049_280--Hb_004531_170 Hb_010812_060 Hb_010812_060 Hb_001366_390--Hb_010812_060 Hb_004040_010 Hb_004040_010 Hb_001366_390--Hb_004040_010 Hb_000002_370 Hb_000002_370 Hb_001366_390--Hb_000002_370 Hb_018134_010 Hb_018134_010 Hb_001366_390--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_001366_390--Hb_011794_050 Hb_004228_070 Hb_004228_070 Hb_005643_040--Hb_004228_070 Hb_007221_040 Hb_007221_040 Hb_005643_040--Hb_007221_040 Hb_003454_050 Hb_003454_050 Hb_005643_040--Hb_003454_050 Hb_021576_130 Hb_021576_130 Hb_005643_040--Hb_021576_130 Hb_007123_010 Hb_007123_010 Hb_005643_040--Hb_007123_010 Hb_005643_040--Hb_007130_020 Hb_000103_370--Hb_007123_010 Hb_000103_370--Hb_000002_370 Hb_054926_010 Hb_054926_010 Hb_000103_370--Hb_054926_010 Hb_006922_020 Hb_006922_020 Hb_000103_370--Hb_006922_020 Hb_008019_010 Hb_008019_010 Hb_000103_370--Hb_008019_010 Hb_000809_130 Hb_000809_130 Hb_000103_370--Hb_000809_130 Hb_000710_030 Hb_000710_030 Hb_000928_280--Hb_000710_030 Hb_161103_010 Hb_161103_010 Hb_000928_280--Hb_161103_010 Hb_000928_280--Hb_008895_020 Hb_008406_060 Hb_008406_060 Hb_000928_280--Hb_008406_060 Hb_006651_030 Hb_006651_030 Hb_000928_280--Hb_006651_030 Hb_001477_060 Hb_001477_060 Hb_000928_280--Hb_001477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.978629 4.85794 9.78546 7.4983 0.228221 0.2487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.226429 5.77012

CAGE analysis