Hb_000049_280

Information

Type -
Description -
Location Contig49: 247855-253855
Sequence    

Annotation

kegg
ID rcu:RCOM_0995940
description kinase, putative
nr
ID XP_012085192.1
description PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
swissprot
ID Q8R1Q9
description Ribokinase OS=Mus musculus GN=Rbks PE=2 SV=1
trembl
ID A0A067JRD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17600 PE=3 SV=1
Gene Ontology
ID GO:0004747
description ribokinase-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45276: 248106-262430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_280 0.0 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
2 Hb_015934_060 0.1004411862 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
3 Hb_007130_020 0.1152956036 - - -
4 Hb_002311_280 0.1176732151 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_001141_350 0.1178483959 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
6 Hb_000836_090 0.1193945598 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
7 Hb_004531_170 0.1226538838 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
8 Hb_033006_020 0.1235886277 - - Aspartate aminotransferase, putative [Ricinus communis]
9 Hb_000588_050 0.1252433765 transcription factor TF Family: Trihelix hypothetical protein POPTR_0008s02580g [Populus trichocarpa]
10 Hb_001936_190 0.1268518422 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
11 Hb_000891_010 0.1302750785 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000181_330 0.1313543498 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
13 Hb_001366_390 0.1340062503 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
14 Hb_000465_020 0.1340337453 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
15 Hb_093077_010 0.1349436062 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
16 Hb_003531_050 0.1353654067 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
17 Hb_000645_260 0.1354337572 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
18 Hb_001301_260 0.135726034 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_044653_050 0.1357333571 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
20 Hb_004117_370 0.1359126009 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_280 Hb_000049_280 Hb_015934_060 Hb_015934_060 Hb_000049_280--Hb_015934_060 Hb_007130_020 Hb_007130_020 Hb_000049_280--Hb_007130_020 Hb_002311_280 Hb_002311_280 Hb_000049_280--Hb_002311_280 Hb_001141_350 Hb_001141_350 Hb_000049_280--Hb_001141_350 Hb_000836_090 Hb_000836_090 Hb_000049_280--Hb_000836_090 Hb_004531_170 Hb_004531_170 Hb_000049_280--Hb_004531_170 Hb_000302_360 Hb_000302_360 Hb_015934_060--Hb_000302_360 Hb_003531_050 Hb_003531_050 Hb_015934_060--Hb_003531_050 Hb_000645_260 Hb_000645_260 Hb_015934_060--Hb_000645_260 Hb_010534_040 Hb_010534_040 Hb_015934_060--Hb_010534_040 Hb_012833_010 Hb_012833_010 Hb_015934_060--Hb_012833_010 Hb_044653_050 Hb_044653_050 Hb_007130_020--Hb_044653_050 Hb_007130_020--Hb_002311_280 Hb_007130_020--Hb_000836_090 Hb_006922_020 Hb_006922_020 Hb_007130_020--Hb_006922_020 Hb_033006_020 Hb_033006_020 Hb_007130_020--Hb_033006_020 Hb_004228_070 Hb_004228_070 Hb_007130_020--Hb_004228_070 Hb_022092_110 Hb_022092_110 Hb_002311_280--Hb_022092_110 Hb_003266_090 Hb_003266_090 Hb_002311_280--Hb_003266_090 Hb_002311_280--Hb_033006_020 Hb_002311_280--Hb_044653_050 Hb_000181_330 Hb_000181_330 Hb_002311_280--Hb_000181_330 Hb_001141_350--Hb_000836_090 Hb_000062_130 Hb_000062_130 Hb_001141_350--Hb_000062_130 Hb_001936_190 Hb_001936_190 Hb_001141_350--Hb_001936_190 Hb_001141_350--Hb_000645_260 Hb_001141_350--Hb_000181_330 Hb_000465_020 Hb_000465_020 Hb_001141_350--Hb_000465_020 Hb_000836_090--Hb_033006_020 Hb_002053_180 Hb_002053_180 Hb_000836_090--Hb_002053_180 Hb_000905_100 Hb_000905_100 Hb_000836_090--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_000622_050 Hb_000622_050 Hb_004531_170--Hb_000622_050 Hb_000982_100 Hb_000982_100 Hb_004531_170--Hb_000982_100 Hb_004531_170--Hb_001936_190 Hb_004117_370 Hb_004117_370 Hb_004531_170--Hb_004117_370 Hb_000012_330 Hb_000012_330 Hb_004531_170--Hb_000012_330 Hb_004531_170--Hb_000181_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.930184 9.24067 21.7742 15.5848 0.254546 0.902848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107178 0 0.57806 1.84296 15.6754

CAGE analysis