Hb_004531_170

Information

Type -
Description -
Location Contig4531: 112859-117379
Sequence    

Annotation

kegg
ID cam:101502382
description peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB-like
nr
ID XP_012073389.1
description PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
swissprot
ID Q93Z51
description Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana GN=At3g16190 PE=2 SV=1
trembl
ID A0A067KM17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06317 PE=4 SV=1
Gene Ontology
ID GO:0003824
description isochorismatase hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43322: 113305-115437 , PASA_asmbl_43323: 112891-117367 , PASA_asmbl_43324: 115690-117366 , PASA_asmbl_43326: 113305-113725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_170 0.0 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
2 Hb_000622_050 0.0949258215 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000982_100 0.0953497105 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
4 Hb_001936_190 0.1033190442 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
5 Hb_004117_370 0.1143548484 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
6 Hb_000012_330 0.1145184879 - - pollen specific protein sf21, putative [Ricinus communis]
7 Hb_000181_330 0.1160054845 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
8 Hb_000417_050 0.1179482561 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
9 Hb_000645_260 0.1200881762 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
10 Hb_000976_400 0.1209987469 - - synaptotagmin, putative [Ricinus communis]
11 Hb_000049_280 0.1226538838 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
12 Hb_002818_150 0.1228011259 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
13 Hb_005725_240 0.1240874712 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
14 Hb_000322_030 0.1249656211 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
15 Hb_001141_350 0.1267364641 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
16 Hb_000127_100 0.1271429264 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
17 Hb_028008_040 0.1279657733 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000891_010 0.1301041225 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004220_010 0.1318580944 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
20 Hb_015934_060 0.1335195185 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_004531_170 Hb_004531_170 Hb_000622_050 Hb_000622_050 Hb_004531_170--Hb_000622_050 Hb_000982_100 Hb_000982_100 Hb_004531_170--Hb_000982_100 Hb_001936_190 Hb_001936_190 Hb_004531_170--Hb_001936_190 Hb_004117_370 Hb_004117_370 Hb_004531_170--Hb_004117_370 Hb_000012_330 Hb_000012_330 Hb_004531_170--Hb_000012_330 Hb_000181_330 Hb_000181_330 Hb_004531_170--Hb_000181_330 Hb_000622_050--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_000622_050--Hb_000976_400 Hb_004220_010 Hb_004220_010 Hb_000622_050--Hb_004220_010 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_005725_240 Hb_005725_240 Hb_000622_050--Hb_005725_240 Hb_000645_260 Hb_000645_260 Hb_000982_100--Hb_000645_260 Hb_002244_020 Hb_002244_020 Hb_000982_100--Hb_002244_020 Hb_000127_100 Hb_000127_100 Hb_000982_100--Hb_000127_100 Hb_000486_020 Hb_000486_020 Hb_000982_100--Hb_000486_020 Hb_000982_100--Hb_004117_370 Hb_000922_160 Hb_000922_160 Hb_001936_190--Hb_000922_160 Hb_028008_040 Hb_028008_040 Hb_001936_190--Hb_028008_040 Hb_001936_190--Hb_005725_240 Hb_003580_050 Hb_003580_050 Hb_001936_190--Hb_003580_050 Hb_005365_010 Hb_005365_010 Hb_001936_190--Hb_005365_010 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_000107_090 Hb_000107_090 Hb_004117_370--Hb_000107_090 Hb_004117_370--Hb_000127_100 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_000243_060 Hb_000243_060 Hb_000181_330--Hb_000243_060 Hb_000322_030 Hb_000322_030 Hb_000181_330--Hb_000322_030 Hb_002311_280 Hb_002311_280 Hb_000181_330--Hb_002311_280 Hb_000272_030 Hb_000272_030 Hb_000181_330--Hb_000272_030 Hb_000173_270 Hb_000173_270 Hb_000181_330--Hb_000173_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.917284 3.50635 10.6446 9.35473 0.414071 0.108464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.170439 0.100549 0.124432 0.859958 11.1415

CAGE analysis