Hb_004220_010

Information

Type -
Description -
Location Contig4220: 13477-15227
Sequence    

Annotation

kegg
ID rcu:RCOM_0502320
description hypothetical protein
nr
ID XP_012082576.1
description PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004220_010 0.0 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
2 Hb_000622_050 0.0879623745 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001942_010 0.0943617938 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
4 Hb_003581_230 0.1002650346 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
5 Hb_000904_120 0.1012470131 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000976_400 0.1033927986 - - synaptotagmin, putative [Ricinus communis]
7 Hb_084303_010 0.1111191364 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001148_110 0.1143658128 - - -
9 Hb_000046_120 0.1172275904 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
10 Hb_005725_240 0.1178478358 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
11 Hb_000012_330 0.1200562888 - - pollen specific protein sf21, putative [Ricinus communis]
12 Hb_005694_160 0.1216855959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001486_280 0.1220648777 - - hypothetical protein RCOM_1321910 [Ricinus communis]
14 Hb_005337_100 0.1237905056 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
15 Hb_001750_020 0.1250860397 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
16 Hb_012098_160 0.1279722883 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_002244_020 0.1282016858 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
18 Hb_004223_150 0.1287507779 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
19 Hb_002182_010 0.1292089208 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
20 Hb_002066_110 0.1295335512 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004220_010 Hb_004220_010 Hb_000622_050 Hb_000622_050 Hb_004220_010--Hb_000622_050 Hb_001942_010 Hb_001942_010 Hb_004220_010--Hb_001942_010 Hb_003581_230 Hb_003581_230 Hb_004220_010--Hb_003581_230 Hb_000904_120 Hb_000904_120 Hb_004220_010--Hb_000904_120 Hb_000976_400 Hb_000976_400 Hb_004220_010--Hb_000976_400 Hb_084303_010 Hb_084303_010 Hb_004220_010--Hb_084303_010 Hb_000012_330 Hb_000012_330 Hb_000622_050--Hb_000012_330 Hb_000622_050--Hb_000976_400 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_005725_240 Hb_005725_240 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_000046_120 Hb_000046_120 Hb_001942_010--Hb_000046_120 Hb_012395_090 Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_003435_030 Hb_003435_030 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_001942_010--Hb_002702_010 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010 Hb_029576_060 Hb_029576_060 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_003581_230--Hb_000976_400 Hb_000032_360 Hb_000032_360 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000031_180 Hb_000031_180 Hb_000904_120--Hb_000031_180 Hb_000904_120--Hb_012098_160 Hb_007163_100 Hb_007163_100 Hb_000904_120--Hb_007163_100 Hb_015561_010 Hb_015561_010 Hb_000904_120--Hb_015561_010 Hb_000329_780 Hb_000329_780 Hb_000904_120--Hb_000329_780 Hb_002119_100 Hb_002119_100 Hb_000904_120--Hb_002119_100 Hb_000976_400--Hb_005725_240 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240 Hb_005337_100 Hb_005337_100 Hb_084303_010--Hb_005337_100 Hb_084303_010--Hb_001942_010 Hb_084303_010--Hb_005725_240 Hb_001638_200 Hb_001638_200 Hb_084303_010--Hb_001638_200 Hb_000156_110 Hb_000156_110 Hb_084303_010--Hb_000156_110 Hb_060253_010 Hb_060253_010 Hb_084303_010--Hb_060253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.481867 2.69673 15.9938 14.2126 0.638955 0.469604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.436508 17.3182

CAGE analysis