Hb_029576_060

Information

Type -
Description -
Location Contig29576: 66078-68504
Sequence    

Annotation

kegg
ID cic:CICLE_v10016122mg
description hypothetical protein
nr
ID XP_012087604.1
description PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24449 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30902: 65195-68459 , PASA_asmbl_30903: 67706-68380 , PASA_asmbl_30904: 66134-66269 , PASA_asmbl_30905: 66286-67301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029576_060 0.0 - - PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
2 Hb_003581_230 0.1031046789 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
3 Hb_002276_220 0.1149759653 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
4 Hb_000163_190 0.1247276077 - - PREDICTED: 21 kDa protein [Populus euphratica]
5 Hb_034235_010 0.1362962594 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000608_270 0.1365058509 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002704_060 0.1377631746 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_001729_030 0.138019617 - - hypothetical protein VITISV_044457 [Vitis vinifera]
9 Hb_023827_030 0.1411538107 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
10 Hb_004223_150 0.1416436031 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
11 Hb_149644_030 0.1445199456 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
12 Hb_000832_270 0.1448875851 - - conserved hypothetical protein [Ricinus communis]
13 Hb_041433_010 0.1449879369 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_000932_110 0.1455455029 - - Root phototropism protein, putative [Ricinus communis]
15 Hb_165101_010 0.1457567004 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
16 Hb_000069_440 0.1463867649 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
17 Hb_001439_080 0.1464533504 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_009476_030 0.1492181792 - - fatty acid desaturase [Manihot esculenta]
19 Hb_007479_010 0.1495874427 - - Root phototropism protein, putative [Ricinus communis]
20 Hb_007681_010 0.150947611 - - hypothetical protein RCOM_2128750 [Ricinus communis]

Gene co-expression network

sample Hb_029576_060 Hb_029576_060 Hb_003581_230 Hb_003581_230 Hb_029576_060--Hb_003581_230 Hb_002276_220 Hb_002276_220 Hb_029576_060--Hb_002276_220 Hb_000163_190 Hb_000163_190 Hb_029576_060--Hb_000163_190 Hb_034235_010 Hb_034235_010 Hb_029576_060--Hb_034235_010 Hb_000608_270 Hb_000608_270 Hb_029576_060--Hb_000608_270 Hb_002704_060 Hb_002704_060 Hb_029576_060--Hb_002704_060 Hb_004220_010 Hb_004220_010 Hb_003581_230--Hb_004220_010 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_000976_400 Hb_000976_400 Hb_003581_230--Hb_000976_400 Hb_000032_360 Hb_000032_360 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000189_300 Hb_000189_300 Hb_002276_220--Hb_000189_300 Hb_001789_220 Hb_001789_220 Hb_002276_220--Hb_001789_220 Hb_002276_220--Hb_034235_010 Hb_007681_010 Hb_007681_010 Hb_002276_220--Hb_007681_010 Hb_041433_010 Hb_041433_010 Hb_002276_220--Hb_041433_010 Hb_001206_110 Hb_001206_110 Hb_002276_220--Hb_001206_110 Hb_000915_210 Hb_000915_210 Hb_000163_190--Hb_000915_210 Hb_149644_030 Hb_149644_030 Hb_000163_190--Hb_149644_030 Hb_002743_010 Hb_002743_010 Hb_000163_190--Hb_002743_010 Hb_001571_100 Hb_001571_100 Hb_000163_190--Hb_001571_100 Hb_000731_150 Hb_000731_150 Hb_000163_190--Hb_000731_150 Hb_000557_070 Hb_000557_070 Hb_000163_190--Hb_000557_070 Hb_034235_010--Hb_149644_030 Hb_001266_010 Hb_001266_010 Hb_034235_010--Hb_001266_010 Hb_034235_010--Hb_041433_010 Hb_009476_030 Hb_009476_030 Hb_034235_010--Hb_009476_030 Hb_034235_010--Hb_002704_060 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350 Hb_000608_270--Hb_041433_010 Hb_001975_120 Hb_001975_120 Hb_000608_270--Hb_001975_120 Hb_000608_270--Hb_009476_030 Hb_000069_440 Hb_000069_440 Hb_000608_270--Hb_000069_440 Hb_000608_270--Hb_034235_010 Hb_000608_270--Hb_001266_010 Hb_002078_330 Hb_002078_330 Hb_002704_060--Hb_002078_330 Hb_008147_020 Hb_008147_020 Hb_002704_060--Hb_008147_020 Hb_002043_020 Hb_002043_020 Hb_002704_060--Hb_002043_020 Hb_000538_090 Hb_000538_090 Hb_002704_060--Hb_000538_090 Hb_143629_180 Hb_143629_180 Hb_002704_060--Hb_143629_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214255 0.598711 16.9531 8.35851 0.979618 0.240126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.181829 0 0.0183307 13.3757

CAGE analysis