Hb_000189_300

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig189: 266334-268596
Sequence    

Annotation

kegg
ID rcu:RCOM_1427810
description transcription factor, putative
nr
ID XP_002512226.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8H181
description Trihelix transcription factor GTL2 OS=Arabidopsis thaliana GN=At5g28300 PE=2 SV=1
trembl
ID B9REQ7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1427810 PE=4 SV=1
Gene Ontology
ID GO:0003682
description trihelix transcription factor gtl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18670: 266483-268194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_300 0.0 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
2 Hb_000160_020 0.0428857985 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
3 Hb_012807_040 0.0499519687 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
4 Hb_088689_010 0.053579613 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_008173_160 0.053616939 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_001253_050 0.0552302393 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_002973_100 0.0553497486 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
8 Hb_001206_110 0.058692099 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
9 Hb_000739_010 0.0599804746 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
10 Hb_007894_200 0.0600907431 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
11 Hb_001728_070 0.0616254322 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
12 Hb_001646_030 0.0619713195 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
13 Hb_012675_040 0.0621553379 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
14 Hb_000777_080 0.0652404301 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
15 Hb_013394_070 0.0689623228 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
16 Hb_001300_190 0.0696942558 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001789_220 0.072109198 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
18 Hb_002259_120 0.0768939123 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_007681_010 0.0769863911 - - hypothetical protein RCOM_2128750 [Ricinus communis]
20 Hb_008147_020 0.0782163282 - - hypothetical protein JCGZ_25652 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_300 Hb_000189_300 Hb_000160_020 Hb_000160_020 Hb_000189_300--Hb_000160_020 Hb_012807_040 Hb_012807_040 Hb_000189_300--Hb_012807_040 Hb_088689_010 Hb_088689_010 Hb_000189_300--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_000189_300--Hb_008173_160 Hb_001253_050 Hb_001253_050 Hb_000189_300--Hb_001253_050 Hb_002973_100 Hb_002973_100 Hb_000189_300--Hb_002973_100 Hb_000160_020--Hb_002973_100 Hb_000160_020--Hb_008173_160 Hb_000160_020--Hb_088689_010 Hb_000160_020--Hb_012807_040 Hb_000160_020--Hb_001253_050 Hb_007894_200 Hb_007894_200 Hb_000160_020--Hb_007894_200 Hb_012807_040--Hb_088689_010 Hb_012807_040--Hb_008173_160 Hb_012807_040--Hb_002973_100 Hb_012807_040--Hb_001253_050 Hb_000739_010 Hb_000739_010 Hb_012807_040--Hb_000739_010 Hb_088689_010--Hb_008173_160 Hb_088689_010--Hb_002973_100 Hb_088689_010--Hb_007894_200 Hb_000777_080 Hb_000777_080 Hb_088689_010--Hb_000777_080 Hb_008173_160--Hb_002973_100 Hb_008173_160--Hb_007894_200 Hb_008173_160--Hb_000777_080 Hb_001253_050--Hb_002973_100 Hb_001253_050--Hb_008173_160 Hb_001253_050--Hb_088689_010 Hb_001253_050--Hb_007894_200 Hb_002973_100--Hb_007894_200 Hb_013394_070 Hb_013394_070 Hb_002973_100--Hb_013394_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116048 0.0309446 16.7112 7.29831 0 0.0100466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0147998 10.5958

CAGE analysis