Hb_002276_220

Information

Type -
Description -
Location Contig2276: 220926-223976
Sequence    

Annotation

kegg
ID rcu:RCOM_1466920
description hypothetical protein
nr
ID XP_012080460.1
description PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23746: 220925-225381 , PASA_asmbl_23747: 220925-225381 , PASA_asmbl_23749: 220926-228663 , PASA_asmbl_23750: 223978-224243 , PASA_asmbl_23751: 224527-224816
cDNA
(Sanger)
(ID:Location)		 013_P17.ab1: 222766-228663

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_220 0.0 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
2 Hb_000189_300 0.0791087351 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
3 Hb_001789_220 0.0836082375 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
4 Hb_034235_010 0.0841195733 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_007681_010 0.0863493202 - - hypothetical protein RCOM_2128750 [Ricinus communis]
6 Hb_041433_010 0.0878529345 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_001206_110 0.0894611632 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
8 Hb_002704_060 0.0905212505 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
9 Hb_000163_190 0.0905311682 - - PREDICTED: 21 kDa protein [Populus euphratica]
10 Hb_008147_020 0.090946439 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
11 Hb_002042_090 0.0920098977 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
12 Hb_009476_030 0.0928471729 - - fatty acid desaturase [Manihot esculenta]
13 Hb_002043_020 0.0941186528 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
14 Hb_007894_200 0.09515216 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
15 Hb_007853_030 0.0962681519 - - structural molecule, putative [Ricinus communis]
16 Hb_000160_020 0.0962857117 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
17 Hb_002078_330 0.0971023027 - - lipid binding protein, putative [Ricinus communis]
18 Hb_088689_010 0.0995014249 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
19 Hb_008173_160 0.0995080707 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
20 Hb_002973_100 0.0998836773 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]

Gene co-expression network

sample Hb_002276_220 Hb_002276_220 Hb_000189_300 Hb_000189_300 Hb_002276_220--Hb_000189_300 Hb_001789_220 Hb_001789_220 Hb_002276_220--Hb_001789_220 Hb_034235_010 Hb_034235_010 Hb_002276_220--Hb_034235_010 Hb_007681_010 Hb_007681_010 Hb_002276_220--Hb_007681_010 Hb_041433_010 Hb_041433_010 Hb_002276_220--Hb_041433_010 Hb_001206_110 Hb_001206_110 Hb_002276_220--Hb_001206_110 Hb_000160_020 Hb_000160_020 Hb_000189_300--Hb_000160_020 Hb_012807_040 Hb_012807_040 Hb_000189_300--Hb_012807_040 Hb_088689_010 Hb_088689_010 Hb_000189_300--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_000189_300--Hb_008173_160 Hb_001253_050 Hb_001253_050 Hb_000189_300--Hb_001253_050 Hb_002973_100 Hb_002973_100 Hb_000189_300--Hb_002973_100 Hb_001205_140 Hb_001205_140 Hb_001789_220--Hb_001205_140 Hb_001789_220--Hb_041433_010 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_002042_090 Hb_002042_090 Hb_001789_220--Hb_002042_090 Hb_005345_020 Hb_005345_020 Hb_001789_220--Hb_005345_020 Hb_001789_220--Hb_007681_010 Hb_149644_030 Hb_149644_030 Hb_034235_010--Hb_149644_030 Hb_001266_010 Hb_001266_010 Hb_034235_010--Hb_001266_010 Hb_034235_010--Hb_041433_010 Hb_009476_030 Hb_009476_030 Hb_034235_010--Hb_009476_030 Hb_002704_060 Hb_002704_060 Hb_034235_010--Hb_002704_060 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350 Hb_007853_030 Hb_007853_030 Hb_007681_010--Hb_007853_030 Hb_007681_010--Hb_041433_010 Hb_001166_010 Hb_001166_010 Hb_007681_010--Hb_001166_010 Hb_002044_100 Hb_002044_100 Hb_007681_010--Hb_002044_100 Hb_000144_130 Hb_000144_130 Hb_007681_010--Hb_000144_130 Hb_041433_010--Hb_005345_020 Hb_001571_100 Hb_001571_100 Hb_041433_010--Hb_001571_100 Hb_041433_010--Hb_009476_030 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_001728_070 Hb_001728_070 Hb_001206_110--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001206_110--Hb_000777_080 Hb_001206_110--Hb_088689_010 Hb_001206_110--Hb_008173_160 Hb_007894_200 Hb_007894_200 Hb_001206_110--Hb_007894_200 Hb_001206_110--Hb_002973_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19994 0.472073 31.845 14.2415 0.167573 0.263002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.183932 0.0833569 22.6555

CAGE analysis