Hb_084303_010

Information

Type -
Description -
Location Contig84303: 575-1096
Sequence    

Annotation

kegg
ID rcu:RCOM_1628720
description hypothetical protein
nr
ID XP_002526207.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GXM8
description MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1
trembl
ID B9SJN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1628720 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein 6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084303_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005337_100 0.0788940237 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
3 Hb_001942_010 0.0849619247 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
4 Hb_005725_240 0.088875921 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
5 Hb_001638_200 0.0927744245 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
6 Hb_000156_110 0.0948822209 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
7 Hb_060253_010 0.0969952965 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
8 Hb_000046_120 0.0987172581 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
9 Hb_003435_030 0.0994221618 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_002066_110 0.0995930241 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_004635_120 0.1008440263 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
12 Hb_003873_020 0.1012046847 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
13 Hb_000680_170 0.1013375404 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
14 Hb_002835_310 0.1022265062 - - ATP binding protein, putative [Ricinus communis]
15 Hb_032920_020 0.1029750322 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_001750_020 0.1031471476 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
17 Hb_001674_010 0.1045978581 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
18 Hb_002702_010 0.1061352965 - - carbohydrate binding protein, putative [Ricinus communis]
19 Hb_001148_110 0.1076455905 - - -
20 Hb_007163_100 0.1095526055 - - BnaC03g52280D [Brassica napus]

Gene co-expression network

sample Hb_084303_010 Hb_084303_010 Hb_005337_100 Hb_005337_100 Hb_084303_010--Hb_005337_100 Hb_001942_010 Hb_001942_010 Hb_084303_010--Hb_001942_010 Hb_005725_240 Hb_005725_240 Hb_084303_010--Hb_005725_240 Hb_001638_200 Hb_001638_200 Hb_084303_010--Hb_001638_200 Hb_000156_110 Hb_000156_110 Hb_084303_010--Hb_000156_110 Hb_060253_010 Hb_060253_010 Hb_084303_010--Hb_060253_010 Hb_000520_040 Hb_000520_040 Hb_005337_100--Hb_000520_040 Hb_008536_020 Hb_008536_020 Hb_005337_100--Hb_008536_020 Hb_000500_240 Hb_000500_240 Hb_005337_100--Hb_000500_240 Hb_000329_780 Hb_000329_780 Hb_005337_100--Hb_000329_780 Hb_004635_120 Hb_004635_120 Hb_005337_100--Hb_004635_120 Hb_000046_120 Hb_000046_120 Hb_001942_010--Hb_000046_120 Hb_012395_090 Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_003435_030 Hb_003435_030 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_001942_010--Hb_002702_010 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010 Hb_000976_400 Hb_000976_400 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_000622_050 Hb_000622_050 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_000816_240 Hb_000816_240 Hb_005725_240--Hb_000816_240 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_001638_200--Hb_032920_020 Hb_001638_200--Hb_000156_110 Hb_002835_310 Hb_002835_310 Hb_000156_110--Hb_002835_310 Hb_000156_110--Hb_004635_120 Hb_000156_110--Hb_002609_120 Hb_000156_110--Hb_032920_020 Hb_000000_390 Hb_000000_390 Hb_000156_110--Hb_000000_390 Hb_060253_010--Hb_003435_030 Hb_007270_020 Hb_007270_020 Hb_060253_010--Hb_007270_020 Hb_060253_010--Hb_000520_040 Hb_060253_010--Hb_000046_120 Hb_060253_010--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_060253_010--Hb_009788_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15352 0.779793 5.22805 4.47037 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.266499 4.91109

CAGE analysis