Hb_000243_060

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig243: 25572-26821
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11960g
description zinc finger family protein
nr
ID XP_012078406.1
description PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
swissprot
ID Q9FH57
description GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1
trembl
ID A0A067KCD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13676 PE=4 SV=1
Gene Ontology
ID GO:0003677
description gata transcription factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25348: 25247-26876 , PASA_asmbl_25349: 25342-26769
cDNA
(Sanger)
(ID:Location)		 038_D20.ab1: 25895-26769

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_060 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
2 Hb_000181_330 0.091002341 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
3 Hb_010868_040 0.0981956107 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
4 Hb_002078_390 0.1035499426 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
5 Hb_000227_400 0.1039609248 - - lipoxygenase, putative [Ricinus communis]
6 Hb_010381_040 0.1079018313 - - beta-galactosidase, putative [Ricinus communis]
7 Hb_000926_040 0.1146732475 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
8 Hb_000008_200 0.1152127845 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
9 Hb_000322_030 0.1165838679 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
10 Hb_006816_250 0.1166040734 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
11 Hb_004855_020 0.1186122361 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
12 Hb_000645_260 0.1241920925 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
13 Hb_000207_350 0.1263184658 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
14 Hb_005568_020 0.1286981777 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
15 Hb_002311_280 0.1287382181 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_033006_020 0.1297729512 - - Aspartate aminotransferase, putative [Ricinus communis]
17 Hb_001141_350 0.1315377196 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
18 Hb_000465_020 0.1316662413 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
19 Hb_008511_040 0.1349863746 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000958_120 0.1353897361 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_060 Hb_000243_060 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_010868_040 Hb_010868_040 Hb_000243_060--Hb_010868_040 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000227_400 Hb_000227_400 Hb_000243_060--Hb_000227_400 Hb_010381_040 Hb_010381_040 Hb_000243_060--Hb_010381_040 Hb_000926_040 Hb_000926_040 Hb_000243_060--Hb_000926_040 Hb_000322_030 Hb_000322_030 Hb_000181_330--Hb_000322_030 Hb_002311_280 Hb_002311_280 Hb_000181_330--Hb_002311_280 Hb_000272_030 Hb_000272_030 Hb_000181_330--Hb_000272_030 Hb_004531_170 Hb_004531_170 Hb_000181_330--Hb_004531_170 Hb_000173_270 Hb_000173_270 Hb_000181_330--Hb_000173_270 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_010868_040--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_002078_390--Hb_005568_020 Hb_000465_020 Hb_000465_020 Hb_002078_390--Hb_000465_020 Hb_028008_040 Hb_028008_040 Hb_002078_390--Hb_028008_040 Hb_000417_050 Hb_000417_050 Hb_002078_390--Hb_000417_050 Hb_002078_390--Hb_002311_280 Hb_001922_110 Hb_001922_110 Hb_000227_400--Hb_001922_110 Hb_000227_400--Hb_004855_020 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_010381_040--Hb_000207_350 Hb_010381_040--Hb_004855_020 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_000926_040--Hb_010868_040 Hb_006816_250 Hb_006816_250 Hb_000926_040--Hb_006816_250 Hb_000926_040--Hb_010381_040 Hb_000926_040--Hb_004855_020 Hb_004102_080 Hb_004102_080 Hb_000926_040--Hb_004102_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.625112 3.9863 16.1617 11.8808 0.31009 0.463962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01731 1.40036 0.0619064 1.84447 10.6731

CAGE analysis