Hb_006816_250

Information

Type -
Description -
Location Contig6816: 166589-170920
Sequence    

Annotation

kegg
ID rcu:RCOM_1434570
description hypothetical protein
nr
ID XP_012088923.1
description PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_250 0.0 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
2 Hb_000645_260 0.10764157 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
3 Hb_000283_030 0.1076888019 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
4 Hb_001377_120 0.1080868276 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
5 Hb_000926_040 0.1087734759 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
6 Hb_005725_240 0.1149533455 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
7 Hb_000243_060 0.1166040734 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
8 Hb_001269_060 0.1185828169 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
9 Hb_000207_350 0.119678161 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
10 Hb_000392_260 0.1214545295 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
11 Hb_004218_140 0.1240574527 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
12 Hb_000020_090 0.1252328613 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
13 Hb_147378_010 0.1268904752 - - -
14 Hb_019613_030 0.1269218075 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
15 Hb_001936_190 0.1271327178 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
16 Hb_041692_010 0.1272702927 - - annexin [Manihot esculenta]
17 Hb_010868_040 0.1291973065 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
18 Hb_028008_040 0.1313697166 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000976_400 0.1322249216 - - synaptotagmin, putative [Ricinus communis]
20 Hb_002078_390 0.1323166235 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_250 Hb_006816_250 Hb_000645_260 Hb_000645_260 Hb_006816_250--Hb_000645_260 Hb_000283_030 Hb_000283_030 Hb_006816_250--Hb_000283_030 Hb_001377_120 Hb_001377_120 Hb_006816_250--Hb_001377_120 Hb_000926_040 Hb_000926_040 Hb_006816_250--Hb_000926_040 Hb_005725_240 Hb_005725_240 Hb_006816_250--Hb_005725_240 Hb_000243_060 Hb_000243_060 Hb_006816_250--Hb_000243_060 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000302_360 Hb_000302_360 Hb_000645_260--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_000645_260--Hb_033006_020 Hb_000645_260--Hb_001377_120 Hb_103474_010 Hb_103474_010 Hb_000283_030--Hb_103474_010 Hb_000392_260 Hb_000392_260 Hb_000283_030--Hb_000392_260 Hb_000976_400 Hb_000976_400 Hb_000283_030--Hb_000976_400 Hb_003416_020 Hb_003416_020 Hb_000283_030--Hb_003416_020 Hb_001517_070 Hb_001517_070 Hb_000283_030--Hb_001517_070 Hb_001377_120--Hb_001269_060 Hb_121313_010 Hb_121313_010 Hb_001377_120--Hb_121313_010 Hb_001377_120--Hb_000302_360 Hb_001377_120--Hb_033006_020 Hb_010868_040 Hb_010868_040 Hb_000926_040--Hb_010868_040 Hb_000926_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_000926_040--Hb_010381_040 Hb_004855_020 Hb_004855_020 Hb_000926_040--Hb_004855_020 Hb_004102_080 Hb_004102_080 Hb_000926_040--Hb_004102_080 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_000622_050 Hb_000622_050 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_000816_240 Hb_000816_240 Hb_005725_240--Hb_000816_240 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_000243_060--Hb_010868_040 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000227_400 Hb_000227_400 Hb_000243_060--Hb_000227_400 Hb_000243_060--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220798 0.961488 7.70891 5.12466 0.0133271 0.0568967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.265337 0.307054 0.0469334 1.15989 5.83612

CAGE analysis