Hb_103474_010

Information

Type -
Description -
Location Contig103474: 7989-14299
Sequence    

Annotation

kegg
ID rcu:RCOM_0853370
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002517439.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID B9RUJ4
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0853370 PE=4 SV=1
Gene Ontology
ID GO:0004697
description serine threonine-protein kinase d6pk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01361: 7898-8392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103474_010 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_000283_030 0.0728738351 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
3 Hb_000976_400 0.1093386499 - - synaptotagmin, putative [Ricinus communis]
4 Hb_000392_260 0.1120648461 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
5 Hb_005725_240 0.1121316612 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
6 Hb_001517_070 0.1211928836 - - protein with unknown function [Ricinus communis]
7 Hb_001148_110 0.1254819671 - - -
8 Hb_000424_130 0.1285056172 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
9 Hb_000017_200 0.1311523745 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
10 Hb_002822_010 0.1317510678 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
11 Hb_002374_470 0.135514794 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
12 Hb_004218_140 0.1370880822 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
13 Hb_002890_200 0.1370889186 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
14 Hb_008705_030 0.1384736264 - - hypothetical protein JCGZ_13017 [Jatropha curcas]
15 Hb_002835_310 0.1394518988 - - ATP binding protein, putative [Ricinus communis]
16 Hb_041692_010 0.1394960101 - - annexin [Manihot esculenta]
17 Hb_006816_250 0.1402510216 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
18 Hb_002391_030 0.1402704769 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
19 Hb_001936_190 0.14050056 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
20 Hb_003666_070 0.1420443897 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]

Gene co-expression network

sample Hb_103474_010 Hb_103474_010 Hb_000283_030 Hb_000283_030 Hb_103474_010--Hb_000283_030 Hb_000976_400 Hb_000976_400 Hb_103474_010--Hb_000976_400 Hb_000392_260 Hb_000392_260 Hb_103474_010--Hb_000392_260 Hb_005725_240 Hb_005725_240 Hb_103474_010--Hb_005725_240 Hb_001517_070 Hb_001517_070 Hb_103474_010--Hb_001517_070 Hb_001148_110 Hb_001148_110 Hb_103474_010--Hb_001148_110 Hb_000283_030--Hb_000392_260 Hb_000283_030--Hb_000976_400 Hb_006816_250 Hb_006816_250 Hb_000283_030--Hb_006816_250 Hb_003416_020 Hb_003416_020 Hb_000283_030--Hb_003416_020 Hb_000283_030--Hb_001517_070 Hb_000976_400--Hb_005725_240 Hb_000622_050 Hb_000622_050 Hb_000976_400--Hb_000622_050 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240 Hb_004220_010 Hb_004220_010 Hb_000976_400--Hb_004220_010 Hb_001159_070 Hb_001159_070 Hb_000392_260--Hb_001159_070 Hb_000300_110 Hb_000300_110 Hb_000392_260--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_000392_260--Hb_000424_130 Hb_005535_070 Hb_005535_070 Hb_000392_260--Hb_005535_070 Hb_000711_030 Hb_000711_030 Hb_000392_260--Hb_000711_030 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_005725_240--Hb_000816_240 Hb_004218_200 Hb_004218_200 Hb_001517_070--Hb_004218_200 Hb_004592_010 Hb_004592_010 Hb_001517_070--Hb_004592_010 Hb_003580_050 Hb_003580_050 Hb_001517_070--Hb_003580_050 Hb_004218_140 Hb_004218_140 Hb_001517_070--Hb_004218_140 Hb_000722_030 Hb_000722_030 Hb_001148_110--Hb_000722_030 Hb_001638_200 Hb_001638_200 Hb_001148_110--Hb_001638_200 Hb_002835_310 Hb_002835_310 Hb_001148_110--Hb_002835_310 Hb_000156_110 Hb_000156_110 Hb_001148_110--Hb_000156_110 Hb_001942_010 Hb_001942_010 Hb_001148_110--Hb_001942_010 Hb_002042_180 Hb_002042_180 Hb_001148_110--Hb_002042_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0933779 0.207924 2.39591 1.4921 0.057095 0.00920848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0651959 0.341582 1.88925

CAGE analysis