Hb_000283_030

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig283: 77275-79529
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03870g
description POPTRDRAFT_814326; hypothetical protein
nr
ID XP_011038568.1
description PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
swissprot
ID O24407
description Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1
trembl
ID B9I5F9
description Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0013s03870g PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29597: 77281-79317
cDNA
(Sanger)
(ID:Location)		 015_L16.ab1: 77294-78700 , 022_K01.ab1: 77285-78487 , 042_F10.ab1: 77281-78803 , 051_E19.ab1: 77281-78792 , 053_K14.ab1: 77325-78803

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_030 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
2 Hb_103474_010 0.0728738351 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000392_260 0.0937909614 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
4 Hb_000976_400 0.1040268774 - - synaptotagmin, putative [Ricinus communis]
5 Hb_006816_250 0.1076888019 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
6 Hb_003416_020 0.1102726191 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
7 Hb_001517_070 0.1105931059 - - protein with unknown function [Ricinus communis]
8 Hb_005725_240 0.1130324931 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
9 Hb_002890_160 0.1136446887 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
10 Hb_004218_140 0.1140520889 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
11 Hb_001936_190 0.1191117623 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
12 Hb_027684_010 0.1220824454 - - hypothetical protein RCOM_0504250 [Ricinus communis]
13 Hb_000645_260 0.1238011574 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
14 Hb_002374_470 0.1253606102 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
15 Hb_002822_010 0.1259918461 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
16 Hb_001269_060 0.1262204545 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
17 Hb_000948_120 0.1275770348 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
18 Hb_019613_030 0.1278824296 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
19 Hb_000922_160 0.1286541112 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
20 Hb_001148_110 0.1304802042 - - -

Gene co-expression network

sample Hb_000283_030 Hb_000283_030 Hb_103474_010 Hb_103474_010 Hb_000283_030--Hb_103474_010 Hb_000392_260 Hb_000392_260 Hb_000283_030--Hb_000392_260 Hb_000976_400 Hb_000976_400 Hb_000283_030--Hb_000976_400 Hb_006816_250 Hb_006816_250 Hb_000283_030--Hb_006816_250 Hb_003416_020 Hb_003416_020 Hb_000283_030--Hb_003416_020 Hb_001517_070 Hb_001517_070 Hb_000283_030--Hb_001517_070 Hb_103474_010--Hb_000976_400 Hb_103474_010--Hb_000392_260 Hb_005725_240 Hb_005725_240 Hb_103474_010--Hb_005725_240 Hb_103474_010--Hb_001517_070 Hb_001148_110 Hb_001148_110 Hb_103474_010--Hb_001148_110 Hb_001159_070 Hb_001159_070 Hb_000392_260--Hb_001159_070 Hb_000300_110 Hb_000300_110 Hb_000392_260--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_000392_260--Hb_000424_130 Hb_005535_070 Hb_005535_070 Hb_000392_260--Hb_005535_070 Hb_000711_030 Hb_000711_030 Hb_000392_260--Hb_000711_030 Hb_000976_400--Hb_005725_240 Hb_000622_050 Hb_000622_050 Hb_000976_400--Hb_000622_050 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240 Hb_004220_010 Hb_004220_010 Hb_000976_400--Hb_004220_010 Hb_000645_260 Hb_000645_260 Hb_006816_250--Hb_000645_260 Hb_001377_120 Hb_001377_120 Hb_006816_250--Hb_001377_120 Hb_000926_040 Hb_000926_040 Hb_006816_250--Hb_000926_040 Hb_006816_250--Hb_005725_240 Hb_000243_060 Hb_000243_060 Hb_006816_250--Hb_000243_060 Hb_000679_080 Hb_000679_080 Hb_003416_020--Hb_000679_080 Hb_002662_110 Hb_002662_110 Hb_003416_020--Hb_002662_110 Hb_126933_020 Hb_126933_020 Hb_003416_020--Hb_126933_020 Hb_093077_010 Hb_093077_010 Hb_003416_020--Hb_093077_010 Hb_007765_130 Hb_007765_130 Hb_003416_020--Hb_007765_130 Hb_004218_200 Hb_004218_200 Hb_001517_070--Hb_004218_200 Hb_004592_010 Hb_004592_010 Hb_001517_070--Hb_004592_010 Hb_003580_050 Hb_003580_050 Hb_001517_070--Hb_003580_050 Hb_004218_140 Hb_004218_140 Hb_001517_070--Hb_004218_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.1405 19.4803 182.103 92.0236 4.18408 1.77174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27847 1.1494 2.52315 27.4111 136.939

CAGE analysis