Hb_001377_120

Information

Type -
Description -
Location Contig1377: 101221-109217
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17110g
description POPTRDRAFT_816632; hypothetical protein
nr
ID XP_012083223.1
description PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10384: 101151-109109 , PASA_asmbl_10385: 101151-109109 , PASA_asmbl_10386: 101151-105245 , PASA_asmbl_10387: 107795-108023 , PASA_asmbl_10388: 108546-110477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_120 0.0 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
2 Hb_001269_060 0.06839178 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
3 Hb_121313_010 0.090876284 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
4 Hb_000645_260 0.0926755409 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
5 Hb_000302_360 0.0954889495 - - beta-carotene hydroxylase, putative [Ricinus communis]
6 Hb_033006_020 0.0975093142 - - Aspartate aminotransferase, putative [Ricinus communis]
7 Hb_006816_250 0.1080868276 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
8 Hb_003531_050 0.1107670452 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
9 Hb_008053_030 0.1126470152 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
10 Hb_004218_140 0.1126896371 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
11 Hb_000207_350 0.1171900854 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
12 Hb_015934_060 0.1185944262 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
13 Hb_002311_280 0.1213302053 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_000418_170 0.1224442489 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
15 Hb_010534_040 0.1233546002 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
16 Hb_000627_040 0.1243675549 - - leucine-rich repeat protein, putative [Ricinus communis]
17 Hb_002053_180 0.1245071761 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
18 Hb_014720_140 0.1260321407 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
19 Hb_128196_010 0.1313723166 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003666_070 0.1321005315 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_120 Hb_001377_120 Hb_001269_060 Hb_001269_060 Hb_001377_120--Hb_001269_060 Hb_121313_010 Hb_121313_010 Hb_001377_120--Hb_121313_010 Hb_000645_260 Hb_000645_260 Hb_001377_120--Hb_000645_260 Hb_000302_360 Hb_000302_360 Hb_001377_120--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_001377_120--Hb_033006_020 Hb_006816_250 Hb_006816_250 Hb_001377_120--Hb_006816_250 Hb_001269_060--Hb_121313_010 Hb_001269_060--Hb_000645_260 Hb_001269_060--Hb_000302_360 Hb_004218_140 Hb_004218_140 Hb_001269_060--Hb_004218_140 Hb_027684_010 Hb_027684_010 Hb_001269_060--Hb_027684_010 Hb_000627_040 Hb_000627_040 Hb_121313_010--Hb_000627_040 Hb_121313_010--Hb_004218_140 Hb_000086_470 Hb_000086_470 Hb_121313_010--Hb_000086_470 Hb_007632_160 Hb_007632_160 Hb_121313_010--Hb_007632_160 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000645_260--Hb_000302_360 Hb_000645_260--Hb_033006_020 Hb_010534_040 Hb_010534_040 Hb_000302_360--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000302_360--Hb_001606_010 Hb_000302_360--Hb_014720_140 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060 Hb_000836_090 Hb_000836_090 Hb_033006_020--Hb_000836_090 Hb_002311_280 Hb_002311_280 Hb_033006_020--Hb_002311_280 Hb_007130_020 Hb_007130_020 Hb_033006_020--Hb_007130_020 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020 Hb_006816_250--Hb_000645_260 Hb_000283_030 Hb_000283_030 Hb_006816_250--Hb_000283_030 Hb_000926_040 Hb_000926_040 Hb_006816_250--Hb_000926_040 Hb_005725_240 Hb_005725_240 Hb_006816_250--Hb_005725_240 Hb_000243_060 Hb_000243_060 Hb_006816_250--Hb_000243_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.430408 9.45628 53.0963 32.2426 0.0803147 0.19899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.947564 1.25673 1.96969 5.74696 28.8374

CAGE analysis