Hb_000922_160

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Location Contig922: 167108-171751
Sequence    

Annotation

kegg
ID rcu:RCOM_1510580
description 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative (EC:1.1.1.267)
nr
ID AAS94121.1
description putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
swissprot
ID Q9XFS9
description 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2
trembl
ID A1KXW2
description Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Hevea brasiliensis GN=DXR PE=2 SV=1
Gene Ontology
ID GO:0016853
description 1-deoxy-d-xylulose 5-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62488: 167147-171829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_160 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
2 Hb_070136_010 0.0896212829 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_002635_020 0.0924896283 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
4 Hb_001936_190 0.0930901779 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
5 Hb_006478_050 0.098742055 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_002890_160 0.0993321892 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
7 Hb_093077_010 0.0999097834 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
8 Hb_000891_010 0.1048630435 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000173_270 0.109012867 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
10 Hb_001629_120 0.1097609672 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
11 Hb_001775_120 0.1105065265 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
12 Hb_000037_200 0.1182685238 - - RNA binding protein, putative [Ricinus communis]
13 Hb_003141_060 0.1188492917 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_003416_020 0.1191215681 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
15 Hb_001104_150 0.1193701745 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_000185_170 0.1194428479 - - ATP binding protein, putative [Ricinus communis]
17 Hb_005365_010 0.1196694513 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
18 Hb_030827_010 0.1242021571 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
19 Hb_000062_050 0.1243272514 - - protein binding protein, putative [Ricinus communis]
20 Hb_119066_010 0.1250473649 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_160 Hb_000922_160 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_006478_050 Hb_006478_050 Hb_000922_160--Hb_006478_050 Hb_002890_160 Hb_002890_160 Hb_000922_160--Hb_002890_160 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010 Hb_000185_170 Hb_000185_170 Hb_070136_010--Hb_000185_170 Hb_002078_320 Hb_002078_320 Hb_070136_010--Hb_002078_320 Hb_119066_010 Hb_119066_010 Hb_070136_010--Hb_119066_010 Hb_000037_200 Hb_000037_200 Hb_070136_010--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_070136_010--Hb_001629_120 Hb_002601_140 Hb_002601_140 Hb_002635_020--Hb_002601_140 Hb_002635_020--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_002635_020--Hb_000162_200 Hb_004162_320 Hb_004162_320 Hb_002635_020--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_002635_020--Hb_003506_010 Hb_028008_040 Hb_028008_040 Hb_001936_190--Hb_028008_040 Hb_005725_240 Hb_005725_240 Hb_001936_190--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_001936_190--Hb_004531_170 Hb_003580_050 Hb_003580_050 Hb_001936_190--Hb_003580_050 Hb_005365_010 Hb_005365_010 Hb_001936_190--Hb_005365_010 Hb_006478_050--Hb_001629_120 Hb_006478_050--Hb_000037_200 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_002890_160--Hb_000037_200 Hb_003416_020 Hb_003416_020 Hb_093077_010--Hb_003416_020 Hb_093077_010--Hb_006478_050 Hb_000891_010 Hb_000891_010 Hb_093077_010--Hb_000891_010 Hb_000917_200 Hb_000917_200 Hb_093077_010--Hb_000917_200 Hb_001775_120 Hb_001775_120 Hb_093077_010--Hb_001775_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19649 11.8491 37.2404 23.2844 0.588828 0.840075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.9289 0.385727 0.0767285 10.0114 34.407

CAGE analysis