Hb_006478_050

Information

Type -
Description -
Location Contig6478: 47758-50985
Sequence    

Annotation

kegg
ID rcu:RCOM_0646260
description protein kinase atmrk1, putative (EC:2.7.10.2)
nr
ID XP_012092189.1
description PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9SFH0
description Protein kinase atmrk1, putative OS=Ricinus communis GN=RCOM_0646260 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52400: 47670-50878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_050 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
2 Hb_001629_120 0.0945193298 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
3 Hb_000922_160 0.098742055 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
4 Hb_000037_200 0.1005679153 - - RNA binding protein, putative [Ricinus communis]
5 Hb_002890_160 0.1008967547 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
6 Hb_000260_410 0.1025482354 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
7 Hb_001352_030 0.1077507059 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
8 Hb_000891_010 0.1082690562 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005999_020 0.1098937076 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
10 Hb_008878_020 0.1115934406 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
11 Hb_000173_270 0.1120574914 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
12 Hb_000265_170 0.1124864302 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_093077_010 0.1140953779 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
14 Hb_000917_200 0.1160246511 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
15 Hb_000062_050 0.116355128 - - protein binding protein, putative [Ricinus communis]
16 Hb_000968_010 0.116979813 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
17 Hb_000185_170 0.1174353613 - - ATP binding protein, putative [Ricinus communis]
18 Hb_070136_010 0.1189159533 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_001579_060 0.1200407894 - - carbonic anhydrase, putative [Ricinus communis]
20 Hb_001051_010 0.1205300066 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]

Gene co-expression network

sample Hb_006478_050 Hb_006478_050 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000922_160 Hb_000922_160 Hb_006478_050--Hb_000922_160 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_002890_160 Hb_002890_160 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_005365_010 Hb_005365_010 Hb_001629_120--Hb_005365_010 Hb_000173_270 Hb_000173_270 Hb_001629_120--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_001629_120--Hb_000818_090 Hb_000023_130 Hb_000023_130 Hb_001629_120--Hb_000023_130 Hb_000185_170 Hb_000185_170 Hb_001629_120--Hb_000185_170 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_000922_160--Hb_002890_160 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010 Hb_000037_200--Hb_000185_170 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000037_200--Hb_000023_130 Hb_000987_020 Hb_000987_020 Hb_000037_200--Hb_000987_020 Hb_000037_200--Hb_002890_160 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000260_410--Hb_000173_270 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_000272_030 Hb_000272_030 Hb_000260_410--Hb_000272_030 Hb_000260_410--Hb_001629_120 Hb_000941_090 Hb_000941_090 Hb_000260_410--Hb_000941_090 Hb_000260_410--Hb_000818_090 Hb_001352_030--Hb_003531_050 Hb_000265_170 Hb_000265_170 Hb_001352_030--Hb_000265_170 Hb_001606_010 Hb_001606_010 Hb_001352_030--Hb_001606_010 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05377 32.1584 67.6344 33.4024 0.920026 1.49894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.595796 0.243078 0.263544 12.4452 70.4936

CAGE analysis