Hb_000062_050

Information

Type -
Description -
Location Contig62: 43810-46177
Sequence    

Annotation

kegg
ID rcu:RCOM_1082540
description protein binding protein, putative
nr
ID XP_002515019.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q6IV57
description RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
trembl
ID B9RMQ0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1082540 PE=4 SV=1
Gene Ontology
ID GO:0005515
description peroxisome biogenesis factor 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51399: 44026-44739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_050 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000037_200 0.0768243977 - - RNA binding protein, putative [Ricinus communis]
3 Hb_000185_170 0.1023990458 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000987_020 0.1067412377 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
5 Hb_070136_010 0.1127956499 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_001266_130 0.1141414442 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
7 Hb_000694_050 0.1159025398 - - Nuclease PA3, putative [Ricinus communis]
8 Hb_006478_050 0.116355128 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
9 Hb_093364_010 0.1195249587 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
10 Hb_002601_140 0.1195600428 - - signal transducer, putative [Ricinus communis]
11 Hb_001579_060 0.120522468 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_000917_200 0.1210349394 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
13 Hb_008878_020 0.1213783613 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
14 Hb_000990_040 0.1218898739 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
15 Hb_000046_430 0.1232164522 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
16 Hb_002078_320 0.123607765 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
17 Hb_000922_160 0.1243272514 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
18 Hb_002890_160 0.1253824288 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
19 Hb_002030_090 0.1270410992 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_005999_020 0.1306563961 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000062_050 Hb_000062_050 Hb_000037_200 Hb_000037_200 Hb_000062_050--Hb_000037_200 Hb_000185_170 Hb_000185_170 Hb_000062_050--Hb_000185_170 Hb_000987_020 Hb_000987_020 Hb_000062_050--Hb_000987_020 Hb_070136_010 Hb_070136_010 Hb_000062_050--Hb_070136_010 Hb_001266_130 Hb_001266_130 Hb_000062_050--Hb_001266_130 Hb_000694_050 Hb_000694_050 Hb_000062_050--Hb_000694_050 Hb_000037_200--Hb_000185_170 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_000037_200--Hb_000987_020 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160 Hb_000185_170--Hb_070136_010 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000185_170--Hb_000987_020 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000987_020--Hb_000694_050 Hb_000922_160 Hb_000922_160 Hb_070136_010--Hb_000922_160 Hb_070136_010--Hb_002078_320 Hb_119066_010 Hb_119066_010 Hb_070136_010--Hb_119066_010 Hb_070136_010--Hb_000037_200 Hb_070136_010--Hb_001629_120 Hb_000020_020 Hb_000020_020 Hb_001266_130--Hb_000020_020 Hb_008878_020 Hb_008878_020 Hb_001266_130--Hb_008878_020 Hb_000212_270 Hb_000212_270 Hb_001266_130--Hb_000212_270 Hb_001501_020 Hb_001501_020 Hb_001266_130--Hb_001501_020 Hb_000046_430 Hb_000046_430 Hb_001266_130--Hb_000046_430 Hb_000694_050--Hb_001579_060 Hb_001883_010 Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_000694_050--Hb_002078_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101064 1.08254 2.48423 1.08675 0 0.0367095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.838751 2.14381

CAGE analysis