Hb_000265_170

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig265: 192837-206928
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19190g
description POPTRDRAFT_766665; hypothetical protein
nr
ID XP_011034099.1
description PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
swissprot
ID Q8W3K3
description Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1
trembl
ID B9HLR9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19190g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_170 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
2 Hb_001352_030 0.0787462765 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
3 Hb_003337_020 0.0906145094 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
4 Hb_000185_170 0.090712926 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003531_050 0.0924623278 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
6 Hb_111997_010 0.0941476101 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
7 Hb_001606_010 0.0961320249 - - kinase, putative [Ricinus communis]
8 Hb_000037_200 0.0963674581 - - RNA binding protein, putative [Ricinus communis]
9 Hb_005486_020 0.0997985044 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
10 Hb_002890_160 0.1053435505 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
11 Hb_063405_010 0.1053947709 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
12 Hb_002030_090 0.1087815644 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_132356_010 0.112189883 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_006478_050 0.1124864302 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
15 Hb_000023_130 0.112893236 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
16 Hb_070136_010 0.1136735884 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_006188_020 0.1149610566 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
18 Hb_001926_070 0.1151560753 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
19 Hb_029095_010 0.1179824061 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
20 Hb_001301_260 0.1184508892 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000265_170 Hb_000265_170 Hb_001352_030 Hb_001352_030 Hb_000265_170--Hb_001352_030 Hb_003337_020 Hb_003337_020 Hb_000265_170--Hb_003337_020 Hb_000185_170 Hb_000185_170 Hb_000265_170--Hb_000185_170 Hb_003531_050 Hb_003531_050 Hb_000265_170--Hb_003531_050 Hb_111997_010 Hb_111997_010 Hb_000265_170--Hb_111997_010 Hb_001606_010 Hb_001606_010 Hb_000265_170--Hb_001606_010 Hb_001352_030--Hb_003531_050 Hb_001352_030--Hb_001606_010 Hb_010534_040 Hb_010534_040 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_002890_160 Hb_002890_160 Hb_001352_030--Hb_002890_160 Hb_063405_010 Hb_063405_010 Hb_003337_020--Hb_063405_010 Hb_000697_020 Hb_000697_020 Hb_003337_020--Hb_000697_020 Hb_001544_060 Hb_001544_060 Hb_003337_020--Hb_001544_060 Hb_005888_050 Hb_005888_050 Hb_003337_020--Hb_005888_050 Hb_001898_100 Hb_001898_100 Hb_003337_020--Hb_001898_100 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000037_200 Hb_000037_200 Hb_000185_170--Hb_000037_200 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000185_170--Hb_000987_020 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_003531_050--Hb_001606_010 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_003531_050--Hb_002890_160 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360 Hb_074966_010 Hb_074966_010 Hb_111997_010--Hb_074966_010 Hb_006188_020 Hb_006188_020 Hb_111997_010--Hb_006188_020 Hb_001677_170 Hb_001677_170 Hb_111997_010--Hb_001677_170 Hb_111997_010--Hb_001606_010 Hb_059318_010 Hb_059318_010 Hb_111997_010--Hb_059318_010 Hb_001926_070 Hb_001926_070 Hb_111997_010--Hb_001926_070 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.431924 1.32008 0.466213 0 0.00563799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0138307 0 0 0.168313 0.929618

CAGE analysis