Hb_000023_130

Information

Type -
Description -
Location Contig23: 336141-339290
Sequence    

Annotation

kegg
ID gmx:100810191
description metal-nicotianamine transporter YSL1-like
nr
ID KHN14758.1
description Metal-nicotianamine transporter YSL1 [Glycine soja]
swissprot
ID Q6R3L0
description Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2
trembl
ID K7LJZ0
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0055085
description metal-nicotianamine transporter ysl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23939: 336567-336779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_130 0.0 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
2 Hb_000759_040 0.0706605466 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_001051_010 0.0830887178 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
4 Hb_132356_010 0.083560527 - - receptor serine/threonine kinase, putative [Ricinus communis]
5 Hb_009788_020 0.0836154771 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
6 Hb_000037_200 0.0848528325 - - RNA binding protein, putative [Ricinus communis]
7 Hb_001629_120 0.0857701483 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
8 Hb_000483_430 0.0869987164 - - -
9 Hb_000703_120 0.0875428572 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
10 Hb_000185_170 0.0908870833 - - ATP binding protein, putative [Ricinus communis]
11 Hb_006618_110 0.093576549 - - -
12 Hb_004855_080 0.0946838725 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
13 Hb_000627_050 0.0956675947 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
14 Hb_004946_010 0.0978121736 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
15 Hb_002073_150 0.0978936716 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
16 Hb_011104_020 0.0991225142 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
17 Hb_005892_050 0.099804416 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
18 Hb_000486_020 0.1009678868 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
19 Hb_000212_410 0.1019161956 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
20 Hb_002890_200 0.1024787339 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000023_130 Hb_000023_130 Hb_000759_040 Hb_000759_040 Hb_000023_130--Hb_000759_040 Hb_001051_010 Hb_001051_010 Hb_000023_130--Hb_001051_010 Hb_132356_010 Hb_132356_010 Hb_000023_130--Hb_132356_010 Hb_009788_020 Hb_009788_020 Hb_000023_130--Hb_009788_020 Hb_000037_200 Hb_000037_200 Hb_000023_130--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_000023_130--Hb_001629_120 Hb_005892_050 Hb_005892_050 Hb_000759_040--Hb_005892_050 Hb_004602_010 Hb_004602_010 Hb_000759_040--Hb_004602_010 Hb_004855_080 Hb_004855_080 Hb_000759_040--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_000759_040--Hb_001488_420 Hb_006618_110 Hb_006618_110 Hb_000759_040--Hb_006618_110 Hb_000608_290 Hb_000608_290 Hb_001051_010--Hb_000608_290 Hb_018591_020 Hb_018591_020 Hb_001051_010--Hb_018591_020 Hb_000627_050 Hb_000627_050 Hb_001051_010--Hb_000627_050 Hb_002073_150 Hb_002073_150 Hb_001051_010--Hb_002073_150 Hb_000140_460 Hb_000140_460 Hb_001051_010--Hb_000140_460 Hb_132356_010--Hb_006618_110 Hb_132356_010--Hb_000759_040 Hb_001301_260 Hb_001301_260 Hb_132356_010--Hb_001301_260 Hb_010534_040 Hb_010534_040 Hb_132356_010--Hb_010534_040 Hb_000302_360 Hb_000302_360 Hb_132356_010--Hb_000302_360 Hb_000212_410 Hb_000212_410 Hb_009788_020--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_009788_020--Hb_000703_120 Hb_009788_020--Hb_000627_050 Hb_007270_020 Hb_007270_020 Hb_009788_020--Hb_007270_020 Hb_060253_010 Hb_060253_010 Hb_009788_020--Hb_060253_010 Hb_009788_020--Hb_001488_420 Hb_000185_170 Hb_000185_170 Hb_000037_200--Hb_000185_170 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000987_020 Hb_000987_020 Hb_000037_200--Hb_000987_020 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160 Hb_005365_010 Hb_005365_010 Hb_001629_120--Hb_005365_010 Hb_000173_270 Hb_000173_270 Hb_001629_120--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_001629_120--Hb_000818_090 Hb_001629_120--Hb_000185_170 Hb_001629_120--Hb_001051_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0089583 0.0338731 0.0191806 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00642185 0.0342216

CAGE analysis